Rmu_sc0000427.1_g000001

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000427.1
OG0004711
Physical Location & Seq
Reverse (-)
1891 .. 8254
6364 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
atggtgggttgttggatctggatgcgaatgcaggcacaggtgcagggcggtgttgcgacgtcggaaaggtcaggctccaggctccctttttccgacaggtggtgcagcaagcaatccaggtgcgatttggatggcggaggatgggctgaggggcagagatcatggtgggtggggcgacgatggaggggtgatggtgtttggccgtcaggtgtggtggtggtctggcggttatgcgactggactggtgatatcacggtggcgggtttgatgtctagtttgtgggcttggctagtgggttggtttgttccctttgctgattgggcccggattggccatgttttacttttctccataatcctcacccctgtccctcaagccaagtccgtccccccaatctcaccccctttccatttccaaaccccctccaagatcatccaatcccccgacgacctccgccgcttccacgactccgattccggcaaacacttcctcggcttcgtcgtcgccctctccgaatccatccgctccaagaaaatctccgacccctgccaccactcccccgtcaccgccgccatcgtctccattctcgacactctcctccgttggatcgacgaaatccctcccactcagcaagccgcccgatacggcaacgtttcgtaccgcgtctggcacgagcgtttggtcgagaatagctacaacctaatgatgcagttcctcccccaacatctggaagcttccaccgtcgagatcgtcccttatttcacagacagcttcggaaacgcgagccggatcgactacggcaccggccacgagaccaatttcgcggcgtggctttattgcctggcgagaatggaggtcattaaggaagaggattaccctgccgtggtggccagagtgttcgtcaagtacttggagttgatgaggaagctgcagctggtgtattgcttagagccggcggggtctcacggcgtttggggccttgacgactaccatttcctgcccttcattttcggctcttcgcagttgattgatcacaagcatatgaagcccaagtccattcataatgatgatatactggagaatttttcaaatgagtatatgtatctttcggggattgcttttgtgaagaaggtgaagaagggtccgttttcggagcactctcctttgttggatgatatcagtggagtgccgaattggaacaaagtcaataaggggatgctgaagatgtataaggttgaggtgttggagaaggtacccatcatgcaacatttcctatttggctggctcatcaactgtaagctttggctccatcaaacttctttgttacgagctgcacctaagcgggattaa

Protein Analysis

449

Amino Acids

51.45

Weight (kDa)

8.32

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTPA PF03095 141 - 431 9.9e-122 Phosphotyrosyl phosphate activator (PTPA) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 1252
AccB1I GGYRCC 2 cut(s) 800, 1252
AccB7I CCANNNNNTGG 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 525
AccII CGCG 3 cut(s) 663, 782, 824
AclI AACGTT 1 cut(s) 651
AclWI GGATC 3 cut(s) 23, 614, 797
AcoI YGGCCR 4 cut(s) 200, 331, 805, 888
AcsI RAATTY 1 cut(s) 1081
AcuI CTGAAG 1 cut(s) 1241
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 3 cut(s) 659, 908, 1254
AfiI CCNNNNNNNGG 3 cut(s) 99, 727, 883
AgsI TTSAA 1 cut(s) 1089
AjnI CCWGG 3 cut(s) 77, 116, 840
AluBI AGCT 7 cut(s) 693, 734, 771, 928, 934, 1300, 1331
AluI AGCT 7 cut(s) 693, 734, 771, 928, 934, 1300, 1331
Alw21I GWGCWC 1 cut(s) 1158
Alw26I GTCTC 3 cut(s) 583, 806, 966
AlwI GGATC 3 cut(s) 23, 614, 797
AoxI GGCC 6 cut(s) 200, 321, 331, 805, 888, 976
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 4 cut(s) 105, 928, 931, 1331
ApoI RAATTY 1 cut(s) 1081
Asp718I GGTACC 1 cut(s) 1252
AspS9I GGNCC 4 cut(s) 321, 322, 976, 1142
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 6 cut(s) 200, 257, 352, 390, 556, 1144
AvaII GGWCC 1 cut(s) 1142
BaeGI GKGCMC 1 cut(s) 325
BalI TGGCCA 2 cut(s) 333, 890
BanI GGYRCC 2 cut(s) 800, 1252
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 2 cut(s) 671, 809
Bbv12I GWGCWC 1 cut(s) 1158
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 4 cut(s) 117, 915, 943, 1318
BccI CCATC 8 cut(s) 125, 135, 174, 185, 527, 581, 1265, 1317
BceAI ACGGC 5 cut(s) 187, 661, 814, 866, 982
BciT130I CCWGG 3 cut(s) 79, 118, 842
BclI TGATCA 1 cut(s) 1030
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 583, 806, 966
BfaI CTAG 2 cut(s) 273, 290
BfmI CTRYAG 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 887
BisI GCNGC 8 cut(s) 106, 457, 570, 636, 825, 929, 932, 1332
BlsI GCNGC 8 cut(s) 107, 458, 571, 637, 826, 930, 933, 1333
BmcAI AGTACT 1 cut(s) 908
Bme1390I CCNGG 4 cut(s) 79, 118, 325, 842
Bme18I GGWCC 1 cut(s) 1142
BmgT120I GGNCC 4 cut(s) 321, 322, 976, 1142
BmiI GGNNCC 8 cut(s) 76, 83, 323, 802, 977, 1143, 1254, 1307
BmrFI CCNGG 4 cut(s) 79, 118, 325, 842
BmsI GCATC 3 cut(s) 12, 696, 1206
BpmI CTGGAG 2 cut(s) 61, 1097
Bpu10I CCTNAGC 2 cut(s) 147, 1338
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 806, 966
BsaJI CCNNGG 2 cut(s) 490, 882
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 727, 883
Bse118I RCCGGY 2 cut(s) 803, 952
Bse1I ACTGG 3 cut(s) 242, 247, 1080
BseBI CCWGG 3 cut(s) 79, 118, 842
BseDI CCNNGG 2 cut(s) 490, 882
BseGI GGATG 7 cut(s) 27, 136, 146, 432, 519, 1177, 1221
BseLI CCNNNNNNNGG 3 cut(s) 99, 727, 883
BseMII CTCAG 2 cut(s) 138, 641
BseNI ACTGG 3 cut(s) 242, 247, 1080
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 4 cut(s) 117, 915, 943, 1318
BsgI GTGCAG 3 cut(s) 62, 124, 1317
Bsh1236I CGCG 3 cut(s) 663, 782, 824
BshFI GGCC 6 cut(s) 202, 323, 333, 807, 890, 978
BshNI GGYRCC 2 cut(s) 800, 1252
BsiHKAI GWGCWC 1 cut(s) 1158
BsiSI CCGG 5 cut(s) 325, 477, 787, 804, 953
BslFI GGGAC 3 cut(s) 353, 371, 737
BslI CCNNNNNNNGG 3 cut(s) 99, 727, 883
BsmAI GTCTC 3 cut(s) 583, 806, 966
BsmBI CGTCTC 1 cut(s) 583
BsmFI GGGAC 3 cut(s) 353, 371, 737
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 6 cut(s) 202, 323, 333, 807, 890, 978
Bso31I GGTCTC 2 cut(s) 806, 966
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 325, 1158
Bsp143I GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
BspANI GGCC 6 cut(s) 202, 323, 333, 807, 890, 978
BspCNI CTCAG 2 cut(s) 139, 640
BspFNI CGCG 3 cut(s) 663, 782, 824
BspLI GGNNCC 8 cut(s) 76, 83, 323, 802, 977, 1143, 1254, 1307
BspMAI CTGCAG 1 cut(s) 933
BspPI GGATC 3 cut(s) 23, 614, 797
BspQI GCTCTTC 1 cut(s) 1021
BspT107I GGYRCC 2 cut(s) 800, 1252
BspTNI GGTCTC 2 cut(s) 806, 966
BsrBI CCGCTC 1 cut(s) 525
BsrFI RCCGGY 2 cut(s) 803, 952
BsrI ACTGG 3 cut(s) 242, 247, 1080
BssAI RCCGGY 2 cut(s) 803, 952
BssECI CCNNGG 2 cut(s) 490, 882
BssMI GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
BssNI GRCGYC 1 cut(s) 59
BssSI CACGAG 2 cut(s) 671, 809
Bst2BI CACGAG 2 cut(s) 671, 809
Bst2UI CCWGG 3 cut(s) 79, 118, 842
Bst4CI ACNGT 3 cut(s) 256, 742, 1295
Bst6I CTCTTC 2 cut(s) 861, 1021
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 6 cut(s) 33, 110, 633, 784, 954, 1283
BstDEI CTNAG 4 cut(s) 147, 627, 946, 1338
BstDSI CCRYGG 1 cut(s) 882
BstF5I GGATG 7 cut(s) 27, 136, 146, 432, 519, 1177, 1221
BstFNI CGCG 3 cut(s) 663, 782, 824
BstKTI GATC 7 cut(s) 18, 161, 432, 609, 750, 792, 1033
BstMAI GTCTC 3 cut(s) 583, 806, 966
BstMBI GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
BstMWI GCNNNNNNNGC 4 cut(s) 320, 887, 975, 1045
BstNI CCWGG 3 cut(s) 79, 118, 842
BstSCI CCNGG 4 cut(s) 77, 116, 323, 840
BstSFI CTRYAG 1 cut(s) 929
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 3 cut(s) 663, 782, 824
BstV1I GCAGC 4 cut(s) 117, 915, 943, 1318
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 6 cut(s) 202, 323, 333, 807, 890, 978
BtgI CCRYGG 1 cut(s) 882
BtsCI GGATG 7 cut(s) 27, 136, 146, 432, 519, 1177, 1221
BtsIMutI CAGTG 1 cut(s) 1186
Cac8I GCNNGC 6 cut(s) 33, 110, 633, 784, 954, 1283
Cfr10I RCCGGY 2 cut(s) 803, 952
Cfr13I GGNCC 4 cut(s) 321, 322, 976, 1142
CseI GACGC 1 cut(s) 652
Csp6I GTAC 3 cut(s) 658, 907, 1253
CviAII CATG 3 cut(s) 162, 335, 1261
CviQI GTAC 3 cut(s) 658, 907, 1253
DdeI CTNAG 4 cut(s) 147, 627, 946, 1338
DpnI GATC 7 cut(s) 17, 160, 431, 608, 749, 791, 1032
DpnII GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
EaeI YGGCCR 4 cut(s) 200, 331, 805, 888
Eam1104I CTCTTC 2 cut(s) 861, 1021
EarI CTCTTC 2 cut(s) 861, 1021
EciI GGCGGA 2 cut(s) 150, 443
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 2 cut(s) 806, 966
Eco32I GATATC 2 cut(s) 250, 1177
Eco47I GGWCC 1 cut(s) 1142
Eco57I CTGAAG 1 cut(s) 1241
EcoO109I RGGNCCY 1 cut(s) 976
EcoRII CCWGG 3 cut(s) 77, 116, 840
EcoRV GATATC 2 cut(s) 250, 1177
EcoT38I GRGCYC 1 cut(s) 325
Esp3I CGTCTC 1 cut(s) 583
FaeI CATG 3 cut(s) 165, 338, 1264
FaqI GGGAC 3 cut(s) 353, 371, 737
FatI CATG 3 cut(s) 161, 334, 1260
FauI CCCGC 3 cut(s) 253, 949, 1335
FauNDI CATATG 1 cut(s) 1041
FbaI TGATCA 1 cut(s) 1030
Fnu4HI GCNGC 8 cut(s) 106, 457, 570, 636, 825, 929, 932, 1332
FokI GGATG 7 cut(s) 34, 143, 153, 419, 506, 1184, 1228
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 8 cut(s) 106, 457, 570, 636, 825, 929, 932, 1332
FspBI CTAG 2 cut(s) 273, 290
GluI GCNGC 8 cut(s) 106, 457, 570, 636, 825, 929, 932, 1332
GsuI CTGGAG 2 cut(s) 61, 1097
HaeIII GGCC 6 cut(s) 202, 323, 333, 807, 890, 978
HapII CCGG 5 cut(s) 325, 477, 787, 804, 953
HgaI GACGC 1 cut(s) 652
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 165, 338, 1264
HindIII AAGCTT 2 cut(s) 732, 1298
HinfI GANTC 3 cut(s) 467, 473, 515
HpaII CCGG 5 cut(s) 325, 477, 787, 804, 953
HphI GGTGA 6 cut(s) 200, 257, 352, 390, 556, 1144
Hpy188I TCNGA 7 cut(s) 64, 94, 472, 514, 541, 776, 1153
Hpy188III TCNNGA 5 cut(s) 19, 587, 685, 728, 745
Hpy99I CGWCG 8 cut(s) 61, 64, 180, 449, 503, 506, 614, 746
HpyAV CCTTC 4 cut(s) 1012, 1123, 1132, 1243
HpyCH4III ACNGT 3 cut(s) 256, 742, 1295
HpyCH4IV ACGT 2 cut(s) 59, 651
HpyCH4V TGCA 7 cut(s) 31, 43, 105, 709, 931, 1264, 1334
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 887, 975, 1045
HpyF3I CTNAG 4 cut(s) 147, 627, 946, 1338
HpySE526I ACGT 2 cut(s) 59, 651
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 165, 338, 1264
KpnI GGTACC 1 cut(s) 1256
KroI GCCGGC 1 cut(s) 952
KroNI GCCGGC 1 cut(s) 954
Ksp22I TGATCA 1 cut(s) 1030
Kzo9I GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
LguI GCTCTTC 1 cut(s) 1021
LmnI GCTCC 5 cut(s) 80, 87, 530, 1153, 1311
Lsp1109I GCAGC 4 cut(s) 117, 915, 943, 1318
LweI GCATC 3 cut(s) 12, 696, 1206
MaeI CTAG 2 cut(s) 273, 290
MaeII ACGT 2 cut(s) 59, 651
MaeIII GTNAC 2 cut(s) 562, 1323
MalI GATC 7 cut(s) 17, 160, 431, 608, 749, 791, 1032
MbiI CCGCTC 1 cut(s) 525
MboI GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
MboII GAAGA 5 cut(s) 878, 1008, 1138, 1147, 1234
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 325, 1158
MlsI TGGCCA 2 cut(s) 333, 890
MluCI AATT 3 cut(s) 817, 1081, 1192
MluNI TGGCCA 2 cut(s) 333, 890
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 6 cut(s) 42, 117, 564, 584, 1149, 1224
Mox20I TGGCCA 2 cut(s) 333, 890
MroNI GCCGGC 1 cut(s) 952
MscI TGGCCA 2 cut(s) 333, 890
MseI TTAA 2 cut(s) 861, 1348
MslI CAYNNNNRTG 1 cut(s) 1065
Msp20I TGGCCA 2 cut(s) 333, 890
MspA1I CMGCKG 1 cut(s) 934
MspI CCGG 5 cut(s) 325, 477, 787, 804, 953
MspR9I CCNGG 4 cut(s) 79, 118, 325, 842
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 3 cut(s) 79, 118, 842
MvnI CGCG 3 cut(s) 663, 782, 824
MwoI GCNNNNNNNGC 4 cut(s) 320, 887, 975, 1045
NaeI GCCGGC 1 cut(s) 954
NciI CCSGG 1 cut(s) 325
NdeI CATATG 1 cut(s) 1041
NdeII GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
NgoMIV GCCGGC 1 cut(s) 952
NlaIII CATG 3 cut(s) 165, 338, 1264
NlaIV GGNNCC 8 cut(s) 76, 83, 323, 802, 977, 1143, 1254, 1307
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 1021
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 510
PctI GAATGC 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 954
PfeI GAWTC 2 cut(s) 473, 515
PflMI CCANNNNNTGG 1 cut(s) 727
PkrI GCNGC 8 cut(s) 107, 458, 571, 637, 826, 930, 933, 1333
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 651
Psp6I CCWGG 3 cut(s) 77, 116, 840
PspGI CCWGG 3 cut(s) 77, 116, 840
PspN4I GGNNCC 8 cut(s) 76, 83, 323, 802, 977, 1143, 1254, 1307
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 4 cut(s) 321, 322, 976, 1142
PstI CTGCAG 1 cut(s) 933
PsuI RGATCY 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 934
RsaI GTAC 3 cut(s) 659, 908, 1254
RsaNI GTAC 3 cut(s) 658, 907, 1253
RseI CAYNNNNRTG 1 cut(s) 1065
SapI GCTCTTC 1 cut(s) 1021
SaqAI TTAA 2 cut(s) 861, 1348
SatI GCNGC 8 cut(s) 106, 457, 570, 636, 825, 929, 932, 1332
Sau3AI GATC 7 cut(s) 15, 158, 429, 606, 747, 789, 1030
Sau96I GGNCC 4 cut(s) 321, 322, 976, 1142
ScaI AGTACT 1 cut(s) 908
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 79, 118, 325, 842
SduI GDGCHC 2 cut(s) 325, 1158
SfaNI GCATC 3 cut(s) 12, 696, 1206
SfcI CTRYAG 1 cut(s) 929
SinI GGWCC 1 cut(s) 1142
SmiMI CAYNNNNRTG 1 cut(s) 1065
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 817, 1081, 1192
SspMI CTAG 2 cut(s) 273, 290
StyD4I CCNGG 4 cut(s) 77, 116, 323, 840
TaaI ACNGT 3 cut(s) 256, 742, 1295
TaiI ACGT 2 cut(s) 62, 654
TaqI TCGA 5 cut(s) 588, 609, 684, 744, 792
TasI AATT 3 cut(s) 817, 1081, 1192
TatI WGTACW 1 cut(s) 906
TauI GCSGC 4 cut(s) 459, 572, 638, 827
TfiI GAWTC 2 cut(s) 473, 515
Tru1I TTAA 2 cut(s) 861, 1348
Tru9I TTAA 2 cut(s) 861, 1348
TscAI CASTG 1 cut(s) 1186
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 4 cut(s) 105, 928, 931, 1331
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 3 cut(s) 994, 1049, 1058
TspGWI ACGGA 3 cut(s) 373, 590, 1134
TspRI CASTG 1 cut(s) 1186
Van91I CCANNNNNTGG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 1142
XapI RAATTY 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 2 cut(s) 273, 290
ZraI GACGTC 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.