Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000510.1

Orthogroup ID

OG0001810

Physical Location & Seq

Genomic Coordinates Forward (+)

40610 .. 43125

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000510.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atggatcgagacgacattgctgttggtgtgggaggtgaaggtggcatcttgcctaatggtaccttccttccaaatgttgggggttatcaccctattattgaccagatacagacaagcaattccaccggggaaatatggacgtctatacacaaatacaaactatggcatgcgcaaggccttgcttcctcagactccaatccatatgcggagttcaatttctttggagatccttttgctgcatacacggtattgcattctggcgttccaatcacactcattcctttagatgcgacaaggacgattcctgtcaacaagaatttctttgctgcatttgaacagaaacaagatacatttgaggcacaatatagcttccagaccttgaaaatggttcgtgatacatggcctaacaataagtttcatgaggaatattgcttctgggattcttttatggttggtgttgcgctgtctcaaatgcgtaacttagaaagatctgatcaagatcatggaggagaaaatgagtttgcggaaatggaatatatgaacatctcagtggttacttcaaatacaccttatggaatctcagatggctcaaatcccctcatcagtgggggtttgatcccaaagttcaatttacagaagaatggagtgcatagtggtcatgttcagctaggtttgcaagacccattttgccttgtcaaggggggtaaaggaaaatgtcaggatggttacacacagaaggcaactggtccggaagccgtttctgttcttgttgcaacagaagctaaaccaaattgtgacattgacgagaagatgcttacgaaaaagttctataaaagtttcttggaagttataaatcgacctaataagcaaactgcacgacttagtaacactagagcagcacagtttctgcctgatgactatgaaagagtagtccaaaagcgaaaagcagattttgaaaagaaaaacacgatgggtaaacctatcgaactgatcaacctccagggaataatagttactccaaatgggtgggcaactgctgcaaccatagaaattctatatgacatactgcatatgatggagcgtgatgatattcaagttggtcttggaaatgtgtttgcagttggacaatcttattcatctgtgactttcactgcgctcggagactgcagctactctaagtccattcgtcacggcagcggtggctccttggactctgatacactctatggatttgctcgtaacttgcctcgtagtcctagaagatacaaaccagaaattagaggaagccctggatttggacaaccgactgcactagatgtttggaagtccatcgtaaaatcactgcatccaggatccaagattactttgttgaccaatggaccgttgacaaatttagccgaaatcattctttctgagaacaacacgtacagactcagtgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IU_nuc_hydro

Protein Analysis

480

Amino Acids

53.06

Weight (kDa)

6.15

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18860 AT5G18860 AT5G18870 AT5G18890
fragaria_vesca	FvH4_4g16830 FvH4_4g16830 FvH4_4g16850 FvH4_4g16850 FvH4_4g16850 FvH4_4g16850 FvH4_4g16850
malus_domestica	MD12G1227000.v1.1 MD13G1176200.v1.1 MD16G1178000.v1.1
prunus_persica	Prupe.1G145300_v2.0.a1 Prupe.1G145300_v2.0.a1 Prupe.6G332600_v2.0.a1 Prupe.6G332600_v2.0.a1
pyrus_communis	pycom12g21140 pycom12g21170 pycom13g15200 pycom16g14950
rosa_chinensis	RchiOBHm_Chr3g0453471 RchiOBHm_Chr4g0420411 RchiOBHm_Chr4g0420421
rosa_laevigata	RLG00000007765 RLG00000025511
rosa_multiflora	Rmu_sc0000510.1_g000010 Rmu_sc0002248.1_g000022
rosa_roxburghii	Rroxscaffold_5G00363050 Rroxscaffold_6G00430440
rosa_rugosa	Rorug02G0649300 Rorug04G0163700
rosa_samantha	Rh3AG052100 Rh3AG052300 Rh3BG053600 Rh3BG053700 Rh3CG052900 Rh3CG053100 Rh3DG053700 Rh3DG053900 Rh4AG225200 Rh4BG228000 Rh4CG239500 Rh4DG223700
rosa_wichuraiana	Rw3G004020 Rw4G019440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AatII	GACGTC	1 cut(s)	143
Acc16I	TGCGCA	1 cut(s)	171
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	3 cut(s)	206, 524, 1197
AclWI	GGATC	5 cut(s)	12, 221, 610, 1347, 1360
AcsI	RAATTY	3 cut(s)	316, 1050, 1390
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	61, 1427
AfiI	CCNNNNNNNGG	3 cut(s)	77, 697, 1295
AflIII	ACRYGT	1 cut(s)	1422
AgsI	TTSAA	7 cut(s)	214, 335, 382, 561, 628, 956, 1094
AjnI	CCWGG	3 cut(s)	999, 1288, 1348
AluBI	AGCT	4 cut(s)	369, 667, 782, 1170
AluI	AGCT	4 cut(s)	369, 667, 782, 1170
Alw26I	GTCTC	3 cut(s)	3, 471, 1155
AlwI	GGATC	5 cut(s)	12, 221, 610, 1347, 1360
AlwNI	CAGNNNCTG	1 cut(s)	907
Aor13HI	TCCGGA	1 cut(s)	748
AoxI	GGCC	2 cut(s)	175, 401
ApeKI	GCWGC	6 cut(s)	236, 326, 896, 1037, 1167, 1194
ApoI	RAATTY	3 cut(s)	316, 1050, 1390
Asp700I	GAANNNNTTC	2 cut(s)	824, 1404
Asp718I	GGTACC	1 cut(s)	59
AspLEI	GCGC	3 cut(s)	172, 463, 1156
AspS9I	GGNCC	2 cut(s)	746, 1379
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	47, 80
AvaII	GGWCC	2 cut(s)	746, 1379
BamHI	GGATCC	1 cut(s)	1352
BanI	GGYRCC	1 cut(s)	59
BbvI	GCAGC	6 cut(s)	223, 313, 908, 1024, 1179, 1206
BccI	CCATC	5 cut(s)	578, 716, 964, 1069, 1337
BceAI	ACGGC	2 cut(s)	740, 1207
BciT130I	CCWGG	3 cut(s)	1001, 1290, 1350
BclI	TGATCA	2 cut(s)	493, 990
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	3, 471, 1155
BfaI	CTAG	4 cut(s)	668, 891, 1257, 1313
BfmI	CTRYAG	1 cut(s)	1165
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	6 cut(s)	237, 327, 897, 1038, 1168, 1195
BlsI	GCNGC	6 cut(s)	238, 328, 898, 1039, 1169, 1196
Bme1390I	CCNGG	4 cut(s)	127, 1001, 1290, 1350
Bme18I	GGWCC	2 cut(s)	746, 1379
BmgT120I	GGNCC	2 cut(s)	746, 1379
BmiI	GGNNCC	3 cut(s)	61, 1204, 1354
BmrFI	CCNGG	4 cut(s)	127, 1001, 1290, 1350
BmsI	GCATC	4 cut(s)	54, 277, 801, 1354
BpmI	CTGGAG	1 cut(s)	983
BpuMI	CCSGG	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	1425
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	126, 1000, 1206, 1288
BsaWI	WCCGGW	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 697, 1295
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	3 cut(s)	1001, 1290, 1350
BseDI	CCNNGG	4 cut(s)	126, 1000, 1206, 1288
BseGI	GGATG	2 cut(s)	727, 1345
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	77, 697, 1295
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	201, 561, 594, 1404
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	522
BseXI	GCAGC	6 cut(s)	223, 313, 908, 1024, 1179, 1206
BsgI	GTGCAG	2 cut(s)	858, 1293
BshFI	GGCC	2 cut(s)	177, 403
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	126, 749
BslI	CCNNNNNNNGG	3 cut(s)	77, 697, 1295
BsmAI	GTCTC	3 cut(s)	3, 471, 1155
BsmBI	CGTCTC	1 cut(s)	3
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	177, 403
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
BspACI	CCGC	3 cut(s)	206, 524, 1197
BspANI	GGCC	2 cut(s)	177, 403
BspCNI	CTCAG	4 cut(s)	200, 560, 593, 1405
BspEI	TCCGGA	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	61, 1204, 1354
BspMAI	CTGCAG	1 cut(s)	1169
BspPI	GGATC	5 cut(s)	12, 221, 610, 1347, 1360
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	4 cut(s)	126, 1000, 1206, 1288
BssMI	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	3 cut(s)	1001, 1290, 1350
Bst4CI	ACNGT	3 cut(s)	247, 903, 1383
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	1037
BstBAI	YACGTR	1 cut(s)	1425
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	8 cut(s)	187, 481, 547, 580, 881, 1176, 1413, 1433
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	727, 1345
BstHHI	GCGC	3 cut(s)	172, 463, 1156
BstKTI	GATC	8 cut(s)	7, 229, 491, 496, 502, 618, 993, 1355
BstMAI	GTCTC	3 cut(s)	3, 471, 1155
BstMBI	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
BstMWI	GCNNNNNNNGC	4 cut(s)	673, 779, 1037, 1200
BstNI	CCWGG	3 cut(s)	1001, 1290, 1350
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	4 cut(s)	125, 999, 1288, 1348
BstSFI	CTRYAG	1 cut(s)	1165
BstV1I	GCAGC	6 cut(s)	223, 313, 908, 1024, 1179, 1206
BstX2I	RGATCY	3 cut(s)	226, 488, 1352
BstXI	CCANNNNNNTGG	1 cut(s)	1026
BstYI	RGATCY	3 cut(s)	226, 488, 1352
BsuRI	GGCC	2 cut(s)	177, 403
BtsCI	GGATG	2 cut(s)	727, 1345
BtsI	GCAGTG	2 cut(s)	1149, 1340
BtsIMutI	CAGTG	5 cut(s)	555, 610, 1149, 1340, 1441
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	907
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	3 cut(s)	172, 463, 1156
Cfr13I	GGNCC	2 cut(s)	746, 1379
Csp6I	GTAC	2 cut(s)	60, 1426
CviAII	CATG	5 cut(s)	167, 399, 419, 503, 659
CviQI	GTAC	2 cut(s)	60, 1426
DdeI	CTNAG	8 cut(s)	187, 481, 547, 580, 881, 1176, 1413, 1433
DpnI	GATC	8 cut(s)	6, 228, 490, 495, 501, 617, 992, 1354
DpnII	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
Eco130I	CCWWGG	1 cut(s)	1206
Eco147I	AGGCCT	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	746, 1379
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoRII	CCWGG	3 cut(s)	999, 1288, 1348
EcoT14I	CCWWGG	1 cut(s)	1206
ErhI	CCWWGG	1 cut(s)	1206
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	5 cut(s)	170, 402, 422, 506, 662
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 1086, 1118
FatI	CATG	5 cut(s)	166, 398, 418, 502, 658
FauNDI	CATATG	2 cut(s)	202, 1071
FbaI	TGATCA	2 cut(s)	493, 990
Fnu4HI	GCNGC	6 cut(s)	237, 327, 897, 1038, 1168, 1195
FokI	GGATG	2 cut(s)	734, 1332
Fsp4HI	GCNGC	6 cut(s)	237, 327, 897, 1038, 1168, 1195
FspBI	CTAG	4 cut(s)	668, 891, 1257, 1313
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	3 cut(s)	171, 462, 1155
GluI	GCNGC	6 cut(s)	237, 327, 897, 1038, 1168, 1195
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	2 cut(s)	177, 403
HapII	CCGG	2 cut(s)	126, 749
HhaI	GCGC	3 cut(s)	172, 463, 1156
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	170, 402, 422, 506, 662
Hin6I	GCGC	3 cut(s)	170, 461, 1154
HinP1I	GCGC	3 cut(s)	170, 461, 1154
HincII	GTYRAC	3 cut(s)	310, 1371, 1386
HindII	GTYRAC	3 cut(s)	310, 1371, 1386
HinfI	GANTC	6 cut(s)	191, 301, 440, 576, 1211, 1431
HpaII	CCGG	2 cut(s)	126, 749
HphI	GGTGA	2 cut(s)	47, 80
Hpy166II	GTNNAC	4 cut(s)	310, 977, 1371, 1386
Hpy188I	TCNGA	6 cut(s)	190, 493, 583, 1160, 1216, 1414
Hpy188III	TCNNGA	7 cut(s)	8, 373, 392, 419, 497, 719, 749
Hpy8I	GTNNAC	4 cut(s)	310, 977, 1371, 1386
HpyAV	CCTTC	4 cut(s)	32, 73, 77, 730
HpyCH4III	ACNGT	3 cut(s)	247, 903, 1383
HpyCH4IV	ACGT	2 cut(s)	140, 1424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	673, 779, 1037, 1200
HpyF3I	CTNAG	8 cut(s)	187, 481, 547, 580, 881, 1176, 1413, 1433
HpySE526I	ACGT	2 cut(s)	140, 1424
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	5 cut(s)	170, 402, 422, 506, 662
HspAI	GCGC	3 cut(s)	170, 461, 1154
Kpn2I	TCCGGA	1 cut(s)	748
KpnI	GGTACC	1 cut(s)	63
Ksp22I	TGATCA	2 cut(s)	493, 990
Kzo9I	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
LmnI	GCTCC	2 cut(s)	1078, 1208
Lsp1109I	GCAGC	6 cut(s)	223, 313, 908, 1024, 1179, 1206
LweI	GCATC	4 cut(s)	54, 277, 801, 1354
MaeI	CTAG	4 cut(s)	668, 891, 1257, 1313
MaeII	ACGT	2 cut(s)	140, 1424
MaeIII	GTNAC	9 cut(s)	476, 553, 725, 794, 884, 1012, 1141, 1187, 1238
MalI	GATC	8 cut(s)	6, 228, 490, 495, 501, 617, 992, 1354
MboI	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
MboII	GAAGA	3 cut(s)	649, 820, 1272
MflI	RGATCY	3 cut(s)	226, 488, 1352
MluCI	AATT	8 cut(s)	118, 214, 316, 628, 790, 1050, 1275, 1390
MlyI	GAGTC	3 cut(s)	185, 1205, 1425
MmeI	TCCRAC	1 cut(s)	1102
MnlI	CCTC	9 cut(s)	26, 196, 349, 415, 500, 608, 1007, 1257, 1274
MroI	TCCGGA	1 cut(s)	748
MroXI	GAANNNNTTC	2 cut(s)	824, 1404
MseI	TTAA	1 cut(s)	1441
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	1197
MspI	CCGG	2 cut(s)	126, 749
MspR9I	CCNGG	4 cut(s)	127, 1001, 1290, 1350
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	3 cut(s)	1001, 1290, 1350
MwoI	GCNNNNNNNGC	4 cut(s)	673, 779, 1037, 1200
NciI	CCSGG	1 cut(s)	127
NdeI	CATATG	2 cut(s)	202, 1071
NdeII	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
NlaIII	CATG	5 cut(s)	170, 402, 422, 506, 662
NlaIV	GGNNCC	3 cut(s)	61, 1204, 1354
NmuCI	GTSAC	3 cut(s)	794, 1141, 1187
NsbI	TGCGCA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	170
PaeI	GCATGC	1 cut(s)	170
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	177
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	824, 1404
PfeI	GAWTC	3 cut(s)	301, 440, 576
PflMI	CCANNNNNTGG	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	1348
PkrI	GCNGC	6 cut(s)	238, 328, 898, 1039, 1169, 1196
PleI	GAGTC	3 cut(s)	185, 1205, 1425
PpsI	GAGTC	3 cut(s)	185, 1205, 1425
Ppu21I	YACGTR	1 cut(s)	1425
PsiI	TTATAA	1 cut(s)	851
Psp6I	CCWGG	3 cut(s)	999, 1288, 1348
PspGI	CCWGG	3 cut(s)	999, 1288, 1348
PspN4I	GGNNCC	3 cut(s)	61, 1204, 1354
PspPI	GGNCC	2 cut(s)	746, 1379
PsrI	GAACNNNNNNTAC	2 cut(s)	1409, 1441
PstI	CTGCAG	1 cut(s)	1169
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	3 cut(s)	226, 488, 1352
RsaI	GTAC	2 cut(s)	61, 1427
RsaNI	GTAC	2 cut(s)	60, 1426
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	1441
SatI	GCNGC	6 cut(s)	237, 327, 897, 1038, 1168, 1195
Sau3AI	GATC	8 cut(s)	4, 226, 488, 493, 499, 615, 990, 1352
Sau96I	GGNCC	2 cut(s)	746, 1379
SchI	GAGTC	3 cut(s)	185, 1205, 1425
ScrFI	CCNGG	4 cut(s)	127, 1001, 1290, 1350
SfaNI	GCATC	4 cut(s)	54, 277, 801, 1354
SfcI	CTRYAG	1 cut(s)	1165
SinI	GGWCC	2 cut(s)	746, 1379
SmiMI	CAYNNNNRTG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	170
Sse9I	AATT	8 cut(s)	118, 214, 316, 628, 790, 1050, 1275, 1390
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	3 cut(s)	206, 524, 1197
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	4 cut(s)	668, 891, 1257, 1313
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	125, 999, 1288, 1348
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	3 cut(s)	247, 903, 1383
TaiI	ACGT	2 cut(s)	143, 1427
TaqI	TCGA	3 cut(s)	7, 856, 984
TasI	AATT	8 cut(s)	118, 214, 316, 628, 790, 1050, 1275, 1390
TfiI	GAWTC	3 cut(s)	301, 440, 576
Tru1I	TTAA	1 cut(s)	1441
Tru9I	TTAA	1 cut(s)	1441
TscAI	CASTG	5 cut(s)	555, 610, 1156, 1347, 1441
TseFI	GTSAC	3 cut(s)	794, 1141, 1187
TseI	GCWGC	6 cut(s)	236, 326, 896, 1037, 1167, 1194
Tsp45I	GTSAC	3 cut(s)	794, 1141, 1187
TspDTI	ATGAA	4 cut(s)	407, 554, 936, 1125
TspRI	CASTG	5 cut(s)	555, 610, 1156, 1347, 1441
Van91I	CCANNNNNTGG	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	746, 1379
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	3 cut(s)	316, 1050, 1390
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	2 cut(s)	824, 1404
XspI	CTAG	4 cut(s)	668, 891, 1257, 1313
ZraI	GACGTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.