Rh3DG053900

Inosine-uridine preferring nucleoside hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001810
Physical Location & Seq
Forward (+)
3662153 .. 3663072
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG053900.1

Sequence Viewer

Length: 744 bp
ATGCAGGATGGTTACACACAGAAGGCAACTGGTCCGGAAGCCGTTTCTGTTCTTGTTGCAACAGAAGCTAAACCAAATTGTGACATTGACGAGAAGATGCTTACGAAAAAGTTCTATAAAAGTTTCTTGGAAGTTATAAATCGACCTAATAAGCAAACCGCACGACTTAGTAACACTAGATCAGCAGCACAGTTTCTGCCTGATGAGTATGAAAGAGTAGTCCAAAAGCAAAAAGCAGATTTTGAAAAGAAAAACACGATGGGTAAACCTGTAGTTTTTGACGTGGATATGAGTGCCGGGGATTTTCTAGCCCTTCTATATCTGCTAAATTTACCTGCAGAACTGATCCACCTCCAGGGAATACTAGTTACTCCAAATGGGTGGGCAACTGCTGCAACCATAGAAATTCTATATGACATACTGCATATGATGGAGCGTGATGATATTCAAGTTGGTCTTGGAAATGTATTTGCAGTTGGACAATCTTATTCATCTGTGACTTTCACTTCGCTCGGAGACTGCAGCTACTCTAAGTCCATTCCTCACGGCAGCGGTGGCTCCTTGGACTCTGATACACTCTATGGATTTGCTCGTGACTTGCCTCGTAGTCCTAGAAGATACAAACCAGAAATTAGAGGAAGCCCTGGATTTGGACAACCGACTGCACTAGATGTTTGGAAGTCCATCGAAAAATCACTGCATCCAGGATCCAAGATTACTTTGTTGACCAATGGGTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IU_nuc_hydro

Protein Analysis

247

Amino Acids

27.32

Weight (kDa)

6.91

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IU_nuc_hydro PF01156 91 - 198 2.7e-06 Inosine-uridine preferring nucleoside hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 343
Acc65I GGTACC 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 2 cut(s) 159, 552
AclWI GGATC 3 cut(s) 340, 702, 715
AcsI RAATTY 2 cut(s) 328, 405
AfaI GTAC 1 cut(s) 737
AfiI CCNNNNNNNGG 2 cut(s) 355, 650
AgsI TTSAA 2 cut(s) 245, 449
AhlI ACTAGT 1 cut(s) 364
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 3 cut(s) 354, 643, 703
AluBI AGCT 2 cut(s) 68, 525
AluI AGCT 2 cut(s) 68, 525
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 340, 702, 715
AlwNI CAGNNNCTG 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 34
ApeKI GCWGC 4 cut(s) 185, 392, 522, 549
ApoI RAATTY 2 cut(s) 328, 405
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
Asp700I GAANNNNTTC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 735
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 707
BanI GGYRCC 1 cut(s) 735
BauI CACGAG 1 cut(s) 591
BbvI GCAGC 4 cut(s) 197, 379, 534, 561
BccI CCATC 4 cut(s) 2, 253, 424, 692
BceAI ACGGC 2 cut(s) 26, 562
BciT130I CCWGG 3 cut(s) 356, 645, 705
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 510
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 5 cut(s) 177, 308, 365, 612, 668
BfmI CTRYAG 3 cut(s) 270, 336, 520
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 4 cut(s) 186, 393, 523, 550
BlsI GCNGC 4 cut(s) 187, 394, 524, 551
Bme1390I CCNGG 4 cut(s) 298, 356, 645, 705
Bme18I GGWCC 1 cut(s) 32
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 3 cut(s) 559, 709, 737
BmrFI CCNGG 4 cut(s) 298, 356, 645, 705
BmsI GCATC 2 cut(s) 87, 709
BpmI CTGGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 298
BsaJI CCNNGG 4 cut(s) 297, 355, 561, 643
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 650
Bse1I ACTGG 1 cut(s) 34
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 3 cut(s) 356, 645, 705
BseDI CCNNGG 4 cut(s) 297, 355, 561, 643
BseGI GGATG 2 cut(s) 13, 700
BseLI CCNNNNNNNGG 2 cut(s) 355, 650
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 4 cut(s) 197, 379, 534, 561
BsgI GTGCAG 1 cut(s) 648
BshNI GGYRCC 1 cut(s) 735
BsiSI CCGG 2 cut(s) 35, 297
BslI CCNNNNNNNGG 2 cut(s) 355, 650
BsmAI GTCTC 1 cut(s) 510
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 3 cut(s) 179, 345, 707
BspACI CCGC 2 cut(s) 159, 552
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 559, 709, 737
BspMAI CTGCAG 2 cut(s) 340, 524
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 3 cut(s) 340, 702, 715
BspT107I GGYRCC 1 cut(s) 735
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 4 cut(s) 297, 355, 561, 643
BssMI GATC 3 cut(s) 179, 345, 707
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 3 cut(s) 356, 645, 705
Bst4CI ACNGT 2 cut(s) 192, 740
BstAPI GCANNNNNTGC 1 cut(s) 392
BstDEI CTNAG 2 cut(s) 167, 531
BstF5I GGATG 2 cut(s) 13, 700
BstKTI GATC 3 cut(s) 182, 348, 710
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 3 cut(s) 179, 345, 707
BstMWI GCNNNNNNNGC 3 cut(s) 65, 392, 555
BstNI CCWGG 3 cut(s) 356, 645, 705
BstSCI CCNGG 4 cut(s) 296, 354, 643, 703
BstSFI CTRYAG 3 cut(s) 270, 336, 520
BstV1I GCAGC 4 cut(s) 197, 379, 534, 561
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 707
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 13, 700
BtsI GCAGTG 1 cut(s) 695
BtsIMutI CAGTG 1 cut(s) 695
BveI ACCTGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 736
CviJI RGCY 6 cut(s) 41, 68, 311, 525, 558, 642
CviKI_1 RGCY 6 cut(s) 41, 68, 311, 525, 558, 642
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 2 cut(s) 167, 531
DpnI GATC 3 cut(s) 181, 347, 709
DpnII GATC 3 cut(s) 179, 345, 707
Eco130I CCWWGG 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 354, 643, 703
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FauNDI CATATG 1 cut(s) 426
Fnu4HI GCNGC 4 cut(s) 186, 393, 523, 550
FokI GGATG 2 cut(s) 20, 687
Fsp4HI GCNGC 4 cut(s) 186, 393, 523, 550
FspBI CTAG 5 cut(s) 177, 308, 365, 612, 668
GluI GCNGC 4 cut(s) 186, 393, 523, 550
GsuI CTGGAG 1 cut(s) 338
HapII CCGG 2 cut(s) 35, 297
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 1 cut(s) 566
HpaII CCGG 2 cut(s) 35, 297
Hpy166II GTNNAC 2 cut(s) 266, 726
Hpy188I TCNGA 2 cut(s) 515, 571
Hpy188III TCNNGA 2 cut(s) 35, 593
Hpy8I GTNNAC 2 cut(s) 266, 726
HpyAV CCTTC 2 cut(s) 16, 323
HpyCH4III ACNGT 2 cut(s) 192, 740
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 9 cut(s) 4, 59, 338, 395, 424, 473, 522, 665, 700
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 392, 555
HpyF3I CTNAG 2 cut(s) 167, 531
HpySE526I ACGT 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 34
KpnI GGTACC 1 cut(s) 739
Kzo9I GATC 3 cut(s) 179, 345, 707
LmnI GCTCC 2 cut(s) 433, 563
Lsp1109I GCAGC 4 cut(s) 197, 379, 534, 561
LweI GCATC 2 cut(s) 87, 709
MaeI CTAG 5 cut(s) 177, 308, 365, 612, 668
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 6 cut(s) 11, 80, 170, 367, 496, 593
MalI GATC 3 cut(s) 181, 347, 709
MboI GATC 3 cut(s) 179, 345, 707
MboII GAAGA 2 cut(s) 106, 627
MflI RGATCY 1 cut(s) 707
MluCI AATT 4 cut(s) 76, 328, 405, 630
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 4 cut(s) 362, 552, 612, 629
MroI TCCGGA 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 552
MspI CCGG 2 cut(s) 35, 297
MspR9I CCNGG 4 cut(s) 298, 356, 645, 705
MvaI CCWGG 3 cut(s) 356, 645, 705
MwoI GCNNNNNNNGC 3 cut(s) 65, 392, 555
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 426
NdeII GATC 3 cut(s) 179, 345, 707
NlaIV GGNNCC 3 cut(s) 559, 709, 737
NmuCI GTSAC 3 cut(s) 80, 496, 593
PdmI GAANNNNTTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 703
PkrI GCNGC 4 cut(s) 187, 394, 524, 551
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PsiI TTATAA 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 354, 643, 703
PspGI CCWGG 3 cut(s) 354, 643, 703
PspN4I GGNNCC 3 cut(s) 559, 709, 737
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 2 cut(s) 340, 524
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
SatI GCNGC 4 cut(s) 186, 393, 523, 550
Sau3AI GATC 3 cut(s) 179, 345, 707
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 4 cut(s) 298, 356, 645, 705
SetI ASST 7 cut(s) 70, 148, 271, 285, 337, 354, 527
SfaNI GCATC 2 cut(s) 87, 709
SfcI CTRYAG 3 cut(s) 270, 336, 520
SinI GGWCC 1 cut(s) 32
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 4 cut(s) 76, 328, 405, 630
SsiI CCGC 2 cut(s) 159, 552
SspMI CTAG 5 cut(s) 177, 308, 365, 612, 668
StyD4I CCNGG 4 cut(s) 296, 354, 643, 703
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 192, 740
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 142, 687
TasI AATT 4 cut(s) 76, 328, 405, 630
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 3 cut(s) 80, 496, 593
TseI GCWGC 4 cut(s) 185, 392, 522, 549
Tsp45I GTSAC 3 cut(s) 80, 496, 593
TspDTI ATGAA 2 cut(s) 225, 480
TspRI CASTG 1 cut(s) 702
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 2 cut(s) 328, 405
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 5 cut(s) 177, 308, 365, 612, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.