Rh3DG053700

Inosine-uridine preferring nucleoside hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001810
Physical Location & Seq
Forward (+)
3660262 .. 3661857
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG053700.1

Sequence Viewer

Length: 1209 bp
ATGATGCTAGGAATTAGAGTCCTTTGGATGCTAAGCGCTACACTATTTGGAGTTCTAATTGTGCTAACTTCAAAGCTATACCATGTCCATGATCATGTCGAAGCAGCTCAGCCCCACCGCATTCTTGTAGACACAGACGTCGATACAGATGATGTTCTTGCTCTTCTTTATCTCTTGAAGCAAAACAGGACGGAATTCGATTTACAGGCGATCACTGTTAACTCAAATGGATGGAGCGATGCCGGGCACGCTGTGAATTACATCTATGACAACCTTTTCGTGATGGATCGAGACAACATTGCTGTTGGTGTGGGAGGTGAAGGTGGCATCTTGCCTAATGGTACATTCCTTCCAAATGTTGGGGGTTATCACCCTATTATTGACCAGAGTTGCGTTTTGATTACTTGCATGGCAAGTCAACAGCCGGTGGTTGCAGATACAGACAAGCAATTCCACCGGGAAAATATGGTCGTCTATACTCTATACACAAATACAAACTATGGCATACGCAAGGCCTTGCTTCCTCAGGGTGGGAGAAAATATGTACCTGTAGAACAAGCTACAGCTCAACAAGTGATGAAAGATGCAGTGTCTGCAGGTTCCATTAGTGTGTTTGTTCTAGGCACACATACAAATTTAGCAATTTTTCTTATGACTAATCCTCACCTTAAGAAAAATATTGAGCATATATATGTCATGGGAGGTGCTATTGAACCTGGCATCGGTAATTTGTTCCCCCCAGACTCCAATCCATATGCAGAGTTCAATTTCTTTGGAGATCCTTTTGCTGCATACACGGTATTGCATTCTGGCGTTCCAATCACAGTCATTCCTTTAGATGCGACAAGGACGATTCCTGTAAACAAGAATTTCTTTGCTGCATTTGAACAGAAACAAGATACATTTGAGGCACAATATAGCTTCCAGACCTTGAAAATGGTTCGTGATACATGGCCTAACAATAAGTTTCATGAGGAATATTGCTTCTGGGATTCTTTTATGGTTGGTGTTGCGCTGTCTCAAATGCGTAACTTAGAGAGATCTGATCAAGATCATGGAGGAGAAAATGAGTTTGCGGAAATGGAATATATGAACATCTCAGTGGTTACTTCAAATACACCTTATGGAATCTCAGATGGCTCAAATCCCCTCATCAGTGGGGGTTTGATCCCAAAGTTCAATTTACGTACAGAAGAATGGAGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IU_nuc_hydro

Protein Analysis

402

Amino Acids

44.8

Weight (kDa)

5.03

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IU_nuc_hydro PF01156 41 - 372 5.6e-39 Inosine-uridine preferring nucleoside hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AatII GACGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 359
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 118, 1076
AclWI GGATC 3 cut(s) 294, 773, 1162
AcsI RAATTY 3 cut(s) 194, 634, 868
AcyI GRCGYC 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 3 cut(s) 343, 546, 1189
AfeI AGCGCT 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 359, 530, 722
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 8 cut(s) 72, 178, 713, 766, 887, 934, 1113, 1180
AjnI CCWGG 1 cut(s) 715
AluBI AGCT 5 cut(s) 76, 107, 560, 566, 921
AluI AGCT 5 cut(s) 76, 107, 560, 566, 921
Alw26I GTCTC 2 cut(s) 285, 1023
AlwI GGATC 3 cut(s) 294, 773, 1162
AlwNI CAGNNNCTG 1 cut(s) 593
Aor51HI AGCGCT 1 cut(s) 37
AoxI GGCC 2 cut(s) 513, 953
ApeKI GCWGC 3 cut(s) 104, 788, 878
ApoI RAATTY 3 cut(s) 194, 634, 868
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 38, 1015
AsuC2I CCSGG 2 cut(s) 244, 458
AsuHPI GGTGA 3 cut(s) 329, 362, 656
AxyI CCTNAGG 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 116, 775, 865
BccI CCATC 3 cut(s) 225, 277, 1130
BciT130I CCWGG 1 cut(s) 717
BclI TGATCA 2 cut(s) 91, 1045
BcnI CCSGG 2 cut(s) 244, 458
BcoDI GTCTC 2 cut(s) 285, 1023
BfaI CTAG 2 cut(s) 8, 620
BfmI CTRYAG 3 cut(s) 549, 561, 594
BfoI RGCGCY 1 cut(s) 39
BfrI CTTAAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 587
BglII AGATCT 1 cut(s) 1040
BisI GCNGC 3 cut(s) 105, 789, 879
BlpI GCTNAGC 2 cut(s) 32, 108
BlsI GCNGC 3 cut(s) 106, 790, 880
Bme1390I CCNGG 3 cut(s) 244, 458, 717
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 3 cut(s) 244, 458, 717
BmsI GCATC 6 cut(s) 18, 229, 336, 574, 729, 829
Bpu1102I GCTNAGC 2 cut(s) 32, 108
BpuMI CCSGG 2 cut(s) 244, 458
BsaAI YACGTR 1 cut(s) 1187
BsaBI GATNNNNATC 1 cut(s) 1050
BsaHI GRCGYC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 530, 722
Bse118I RCCGGY 1 cut(s) 424
Bse21I CCTNAGG 1 cut(s) 525
Bse3DI GCAATG 1 cut(s) 297
Bse8I GATNNNNATC 1 cut(s) 1050
BseBI CCWGG 1 cut(s) 717
BseGI GGATG 2 cut(s) 33, 236
BseJI GATNNNNATC 1 cut(s) 1050
BseLI CCNNNNNNNGG 3 cut(s) 359, 530, 722
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 4 cut(s) 122, 539, 1113, 1146
BseRI GAGGAG 1 cut(s) 1074
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 3 cut(s) 116, 775, 865
BshFI GGCC 2 cut(s) 515, 955
BsiSI CCGG 3 cut(s) 243, 425, 457
BslI CCNNNNNNNGG 3 cut(s) 359, 530, 722
BsmAI GTCTC 2 cut(s) 285, 1023
BsmI GAATGC 2 cut(s) 120, 805
BsnI GGCC 2 cut(s) 515, 955
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
Bsp1720I GCTNAGC 2 cut(s) 32, 108
BspACI CCGC 2 cut(s) 118, 1076
BspANI GGCC 2 cut(s) 515, 955
BspCNI CTCAG 4 cut(s) 121, 538, 1112, 1145
BspHI TCATGA 1 cut(s) 970
BspLI GGNNCC 1 cut(s) 601
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 587
BspPI GGATC 3 cut(s) 294, 773, 1162
BspQI GCTCTTC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssMI GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 217, 799, 826
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 1187
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 6 cut(s) 32, 108, 525, 1033, 1099, 1132
BstF5I GGATG 2 cut(s) 33, 236
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 2 cut(s) 38, 1015
BstKTI GATC 8 cut(s) 94, 213, 289, 781, 1043, 1048, 1054, 1170
BstMAI GTCTC 2 cut(s) 285, 1023
BstMBI GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
BstMWI GCNNNNNNNGC 2 cut(s) 248, 593
BstNI CCWGG 1 cut(s) 717
BstSCI CCNGG 3 cut(s) 242, 456, 715
BstSFI CTRYAG 3 cut(s) 549, 561, 594
BstSLI GKGCMC 1 cut(s) 249
BstSNI TACGTA 1 cut(s) 1187
BstV1I GCAGC 3 cut(s) 116, 775, 865
BstX2I RGATCY 2 cut(s) 778, 1040
BstYI RGATCY 2 cut(s) 778, 1040
Bsu36I CCTNAGG 1 cut(s) 525
BsuRI GGCC 2 cut(s) 515, 955
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 33, 236
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 4 cut(s) 213, 594, 1107, 1162
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 249
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 970
CfoI GCGC 2 cut(s) 38, 1015
Cfr10I RCCGGY 1 cut(s) 424
Csp6I GTAC 3 cut(s) 342, 545, 1188
CviAII CATG 8 cut(s) 83, 89, 95, 409, 697, 951, 971, 1055
CviQI GTAC 3 cut(s) 342, 545, 1188
DdeI CTNAG 6 cut(s) 32, 108, 525, 1033, 1099, 1132
DpnI GATC 8 cut(s) 93, 212, 288, 780, 1042, 1047, 1053, 1169
DpnII GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
DraIII CACNNNGTG 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco105I TACGTA 1 cut(s) 1187
Eco147I AGGCCT 1 cut(s) 515
Eco47III AGCGCT 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 715
FaeI CATG 8 cut(s) 86, 92, 98, 412, 700, 954, 974, 1058
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FatI CATG 8 cut(s) 82, 88, 94, 408, 696, 950, 970, 1054
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 2 cut(s) 91, 1045
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 105, 789, 879
FokI GGATG 2 cut(s) 40, 243
Fsp4HI GCNGC 3 cut(s) 105, 789, 879
FspBI CTAG 2 cut(s) 8, 620
GlaI GCGC 2 cut(s) 37, 1014
GluI GCNGC 3 cut(s) 105, 789, 879
HaeII RGCGCY 1 cut(s) 39
HaeIII GGCC 2 cut(s) 515, 955
HapII CCGG 3 cut(s) 243, 425, 457
HhaI GCGC 2 cut(s) 38, 1015
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 8 cut(s) 86, 92, 98, 412, 700, 954, 974, 1058
Hin6I GCGC 2 cut(s) 36, 1013
HinP1I GCGC 2 cut(s) 36, 1013
HincII GTYRAC 2 cut(s) 220, 419
HindII GTYRAC 2 cut(s) 220, 419
HinfI GANTC 5 cut(s) 18, 743, 853, 992, 1128
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 3 cut(s) 243, 425, 457
HphI GGTGA 3 cut(s) 329, 362, 656
Hpy166II GTNNAC 4 cut(s) 130, 220, 419, 862
Hpy188I TCNGA 2 cut(s) 1045, 1135
Hpy188III TCNNGA 7 cut(s) 175, 280, 290, 925, 944, 971, 1049
Hpy8I GTNNAC 4 cut(s) 130, 220, 419, 862
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 314, 359
HpyCH4III ACNGT 3 cut(s) 217, 799, 826
HpyCH4IV ACGT 2 cut(s) 138, 1186
HpyCH4V TGCA 9 cut(s) 408, 434, 587, 596, 758, 791, 805, 881, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 593
HpyF3I CTNAG 6 cut(s) 32, 108, 525, 1033, 1099, 1132
HpySE526I ACGT 2 cut(s) 138, 1186
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 8 cut(s) 86, 92, 98, 412, 700, 954, 974, 1058
HspAI GCGC 2 cut(s) 36, 1013
Ksp22I TGATCA 2 cut(s) 91, 1045
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
LguI GCTCTTC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 3 cut(s) 116, 775, 865
LweI GCATC 6 cut(s) 18, 229, 336, 574, 729, 829
MaeI CTAG 2 cut(s) 8, 620
MaeII ACGT 2 cut(s) 138, 1186
MaeIII GTNAC 2 cut(s) 1028, 1105
MalI GATC 8 cut(s) 93, 212, 288, 780, 1042, 1047, 1053, 1169
MboI GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
MboII GAAGA 2 cut(s) 155, 1205
MflI RGATCY 2 cut(s) 778, 1040
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 2 cut(s) 27, 737
MnlI CCTC 8 cut(s) 308, 534, 672, 695, 901, 967, 1052, 1160
MseI TTAA 2 cut(s) 219, 669
MslI CAYNNNNRTG 5 cut(s) 87, 93, 608, 690, 1100
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 3 cut(s) 243, 425, 457
MspR9I CCNGG 3 cut(s) 244, 458, 717
Mva1269I GAATGC 2 cut(s) 120, 805
MvaI CCWGG 1 cut(s) 717
MwoI GCNNNNNNNGC 2 cut(s) 248, 593
NciI CCSGG 2 cut(s) 244, 458
NdeI CATATG 1 cut(s) 754
NdeII GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
NlaIII CATG 8 cut(s) 86, 92, 98, 412, 700, 954, 974, 1058
NlaIV GGNNCC 1 cut(s) 601
PagI TCATGA 1 cut(s) 970
PceI AGGCCT 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 168
PctI GAATGC 2 cut(s) 120, 805
PfeI GAWTC 3 cut(s) 853, 992, 1128
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 3 cut(s) 106, 790, 880
PleI GAGTC 2 cut(s) 26, 737
PpsI GAGTC 2 cut(s) 26, 737
Ppu21I YACGTR 1 cut(s) 1187
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 1 cut(s) 601
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 778, 1040
RsaI GTAC 3 cut(s) 343, 546, 1189
RsaNI GTAC 3 cut(s) 342, 545, 1188
RseI CAYNNNNRTG 5 cut(s) 87, 93, 608, 690, 1100
SapI GCTCTTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 219, 669
SatI GCNGC 3 cut(s) 105, 789, 879
Sau3AI GATC 8 cut(s) 91, 210, 286, 778, 1040, 1045, 1051, 1167
SchI GAGTC 2 cut(s) 27, 737
ScrFI CCNGG 3 cut(s) 244, 458, 717
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 6 cut(s) 18, 229, 336, 574, 729, 829
SfcI CTRYAG 3 cut(s) 549, 561, 594
SmiMI CAYNNNNRTG 5 cut(s) 87, 93, 608, 690, 1100
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SnaBI TACGTA 1 cut(s) 1187
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 2 cut(s) 118, 1076
SspI AATATT 2 cut(s) 679, 980
SspMI CTAG 2 cut(s) 8, 620
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 242, 456, 715
TaaI ACNGT 3 cut(s) 217, 799, 826
TaiI ACGT 2 cut(s) 141, 1189
TaqI TCGA 4 cut(s) 99, 141, 198, 289
TfiI GAWTC 3 cut(s) 853, 992, 1128
Tru1I TTAA 2 cut(s) 219, 669
Tru9I TTAA 2 cut(s) 219, 669
TscAI CASTG 4 cut(s) 220, 594, 1107, 1162
TseI GCWGC 3 cut(s) 104, 788, 878
TspDTI ATGAA 3 cut(s) 593, 959, 1106
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 220, 594, 1107, 1162
Van91I CCANNNNNTGG 1 cut(s) 359
Vha464I CTTAAG 1 cut(s) 668
XapI RAATTY 3 cut(s) 194, 634, 868
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 2 cut(s) 8, 620
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.