Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

OG0014867

Physical Location & Seq

Genomic Coordinates Forward (+)

515188 .. 515487

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgtcagctatgaaaatgacgacgtttcgatcaacgacatgtcagtggcttttccgcgcggggtcgaattcgttgtcgaagatgagtaggaaccagacggcggggctaaaggagatggagagcagctacgagagggttttggatgagaattgtagggttttcagtgagtatttcagggaggttttggagaataaagatggaggaagagtgattgatccaccagccgtggtgttggaattgagtgaaggaagtgatgagttccgctatgatgatcgaagcaccggagaagatgaagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box WD40

Protein Analysis

99

Amino Acids

11.31

Weight (kDa)

4.66

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014867)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007876 RLG00000008120 RLG00000023540
rosa_multiflora	Rmu_sc0000580.1_g000127 Rmu_sc0000898.1_g000092 Rmu_sc0001192.1_g000031 Rmu_sc0001955.1_g000036 Rmu_sc0003214.1_g000010 Rmu_sc0011910.1_g000004
rosa_roxburghii	Rroxscaffold_1G00043220 Rroxscaffold_2G00138050 Rroxscaffold_3G00261050 Rroxscaffold_3G00262520 Rroxscaffold_5G00347700 Rroxscaffold_5G00362210
rosa_samantha	Rh3DG312600 Rh4BG267400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	57, 59
AciI	CCGC	4 cut(s)	55, 59, 101, 262
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	38
AluBI	AGCT	2 cut(s)	8, 126
AluI	AGCT	2 cut(s)	8, 126
AlwI	GGATC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	109, 191
BceAI	ACGGC	2 cut(s)	114, 209
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	57, 59
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	29, 214, 271
BspACI	CCGC	4 cut(s)	55, 59, 101, 262
BspFNI	CGCG	2 cut(s)	57, 59
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	29, 214, 271
Bst6I	CTCTTC	1 cut(s)	199
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	2 cut(s)	57, 59
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	32, 217, 274
BstMBI	GATC	3 cut(s)	29, 214, 271
BstNSI	RCATGY	1 cut(s)	42
BstUI	CGCG	2 cut(s)	57, 59
BstV1I	GCAGC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	50, 169
CfoI	GCGC	1 cut(s)	59
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	5 cut(s)	8, 49, 106, 126, 224
CviKI_1	RGCY	5 cut(s)	8, 49, 106, 126, 224
DpnI	GATC	3 cut(s)	31, 216, 273
DpnII	GATC	3 cut(s)	29, 214, 271
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	42
FaiI	YATR	3 cut(s)	11, 40, 267
FatI	CATG	1 cut(s)	38
FauI	CCCGC	2 cut(s)	52, 94
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	124
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	124
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	239, 287
HpyCH4IV	ACGT	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	29, 214, 271
LpnPI	CCDG	4 cut(s)	107, 160, 234, 295
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	23
MalI	GATC	3 cut(s)	31, 216, 273
MboI	GATC	3 cut(s)	29, 214, 271
MboII	GAAGA	3 cut(s)	91, 216, 299
MluCI	AATT	3 cut(s)	67, 148, 236
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	126, 172, 194
MslI	CAYNNNNRTG	1 cut(s)	43
MspI	CCGG	1 cut(s)	282
MvnI	CGCG	2 cut(s)	57, 59
NdeII	GATC	3 cut(s)	29, 214, 271
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	42
PciI	ACATGT	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	43
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	3 cut(s)	29, 214, 271
SetI	ASST	4 cut(s)	10, 26, 128, 183
SmiMI	CAYNNNNRTG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	67, 148, 236
SsiI	CCGC	4 cut(s)	55, 59, 101, 262
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	28, 65, 77, 274
TasI	AATT	3 cut(s)	67, 148, 236
TscAI	CASTG	2 cut(s)	50, 169
TseI	GCWGC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	50, 169
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.