Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0010523

Physical Location & Seq

Genomic Coordinates Forward (+)

198918 .. 200150

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgggcaatggaaccagtgttcaagcaaagccagagaaacgacccgttttggagcgaaagacatcctttgctaagaatcataggattgttcccatcaattccgagccaagaatttttgaagagttgatgagatcgtatcaggcggattgcaaagatgacaaagagttgcaagacttcgacgccgaactcagctccggcgccgaagaagtcgtccgcagtaccggtcttgatcggttcaagcaatgcctgaagtacctgacgcaatccaacgagaagattgtgagggtaatcttgtcatgcaaaaaacagatagttgaggcagagggtgtgcaggcgaggatggtgatgaaggcgaatgagcagctcttggatcaatttttgatcaaggagtacttcaacaatagcttgcagacacttcaactctgcagattggaattgcaagactttatcaactcggctcgtgaggtccattcatgcattacagatgtggtacttgattgggaagtgtcgaaaaagctcaacaagtctcagaagatgtatcaccgttctgcggaagcagttgttgccaaggtgaactctctgcgcgaccaccatagagacatgcttgacaagttgaaagatcgaattcagaagtttgataagaagctggagcttactcgtactttaaagaaggtcgtaaatgtggtgttcatgggtatgttgtctggtctgtttgtttgcaccatcatggcggcggctatggctgctccgccagttgcgtcagccttgacctgtcatccatgtattgccggagttattgctggtggtgccgttggttatgctttttcgtcagtattaaaagagggacaacactggcttctgactttgattcaaggttatgaatcaactctggaggcacatacgggtgtaattaagtcgatggaagccggaaccagagacgccattaaagagttggatgacatcatgtgtcatgttaataaggtcattgcaaaagggagtgatccagtgttgtccaatttaagctctgcaaatgatgagggaagagtggatgtggttgatcaggaagtgacgtctattctggaaaagctggcagagtttggcaaggaaattgtggaactggacgagaaaagagagcagtgcctccgggttatagagactgcaagggataaggttctaggggaatatggcgaattgaagagtagcccagtgtggaacacgaagatcaagaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

410

Amino Acids

46.06

Weight (kDa)

7.1

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08100
rosa_chinensis	RchiOBHm_Chr0c38g0503041 RchiOBHm_Chr6g0262781 RchiOBHm_Chr6g0262911
rosa_laevigata	RLG00000014394 RLG00000014414
rosa_multiflora	Rmu_sc0000596.1_g000040 Rmu_sc0003237.1_g000032
rosa_roxburghii	Rroxscaffold_177G00434180 Rroxscaffold_177G00434270 Rroxscaffold_7G00204970 Rroxscaffold_7G00205080 Rroxscaffold_7G00205120
rosa_rugosa	Rorug06G0001100 Rorug06G0001500
rosa_samantha	Rh6AG120000 Rh6BG114300 Rh6CG112600 Rh6DG102100
rosa_wichuraiana	Rw6G010350 Rw6G010720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1073
AccB1I	GGYRCC	2 cut(s)	197, 806
AccII	CGCG	1 cut(s)	585
AciI	CCGC	6 cut(s)	143, 214, 551, 731, 734, 749
AclWI	GGATC	2 cut(s)	378, 995
AcsI	RAATTY	2 cut(s)	111, 624
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	4 cut(s)	180, 198, 939, 1070
AfaI	GTAC	5 cut(s)	220, 254, 392, 492, 661
AfiI	CCNNNNNNNGG	1 cut(s)	550
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	8 cut(s)	23, 119, 238, 397, 419, 616, 872, 1195
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	8 cut(s)	192, 364, 405, 517, 646, 652, 1023, 1087
AluI	AGCT	8 cut(s)	192, 364, 405, 517, 646, 652, 1023, 1087
Alw26I	GTCTC	4 cut(s)	531, 591, 930, 1148
AlwI	GGATC	2 cut(s)	378, 995
ApeKI	GCWGC	2 cut(s)	361, 743
ApoI	RAATTY	2 cut(s)	111, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AsiGI	ACCGGT	1 cut(s)	221
AspLEI	GCGC	2 cut(s)	200, 585
AspS9I	GGNCC	1 cut(s)	466
AsuC2I	CCSGG	1 cut(s)	1145
AsuHPI	GGTGA	3 cut(s)	355, 533, 583
AvaII	GGWCC	1 cut(s)	466
BanI	GGYRCC	2 cut(s)	197, 806
BauI	CACGAG	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	373, 730
BccI	CCATC	4 cut(s)	101, 334, 731, 913
BceAI	ACGGC	1 cut(s)	794
BclI	TGATCA	2 cut(s)	381, 1057
BcnI	CCSGG	1 cut(s)	1145
BcoDI	GTCTC	4 cut(s)	531, 591, 930, 1148
BfaI	CTAG	1 cut(s)	1175
BfmI	CTRYAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	4 cut(s)	362, 732, 735, 744
BlsI	GCNGC	4 cut(s)	363, 733, 736, 745
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	1145
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	4 cut(s)	13, 199, 808, 931
BmrFI	CCNGG	1 cut(s)	1145
BmrI	ACTGGG	1 cut(s)	1199
BmuI	ACTGGG	1 cut(s)	1199
BpmI	CTGGAG	2 cut(s)	668, 911
BpuMI	CCSGG	1 cut(s)	1145
BsaHI	GRCGYC	4 cut(s)	180, 198, 939, 1070
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	6 cut(s)	15, 752, 857, 1004, 1122, 1205
Bse3DI	GCAATG	3 cut(s)	13, 248, 984
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	5 cut(s)	62, 345, 775, 961, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMI	GCAATG	3 cut(s)	13, 248, 984
BseMII	CTCAG	2 cut(s)	202, 542
BseNI	ACTGG	6 cut(s)	15, 752, 857, 1004, 1122, 1205
BseXI	GCAGC	2 cut(s)	373, 730
BsgI	GTGCAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	585
BshNI	GGYRCC	2 cut(s)	197, 806
BshTI	ACCGGT	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	195, 222, 789, 927, 1144
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	4 cut(s)	531, 591, 930, 1148
BsmBI	CGTCTC	1 cut(s)	930
BsmFI	GGGAC	1 cut(s)	858
Bsp143I	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
BspACI	CCGC	6 cut(s)	143, 214, 551, 731, 734, 749
BspCNI	CTCAG	2 cut(s)	201, 541
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	4 cut(s)	13, 199, 808, 931
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	2 cut(s)	378, 995
BspT107I	GGYRCC	2 cut(s)	197, 806
BsrDI	GCAATG	3 cut(s)	13, 248, 984
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	6 cut(s)	15, 752, 857, 1004, 1122, 1205
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
BssNI	GRCGYC	4 cut(s)	180, 198, 939, 1070
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	3 cut(s)	114, 1036, 1190
BstACI	GRCGYC	4 cut(s)	180, 198, 939, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	3 cut(s)	333, 407, 1089
BstDEI	CTNAG	3 cut(s)	72, 188, 528
BstF5I	GGATG	5 cut(s)	62, 345, 775, 961, 1054
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	200, 585
BstKTI	GATC	8 cut(s)	134, 232, 373, 384, 622, 1003, 1060, 1224
BstMAI	GTCTC	4 cut(s)	531, 591, 930, 1148
BstMBI	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
BstMWI	GCNNNNNNNGC	4 cut(s)	563, 740, 743, 806
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	1143
BstSFI	CTRYAG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	373, 730
BtsCI	GGATG	5 cut(s)	62, 345, 775, 961, 1054
BtsI	GCAGTG	1 cut(s)	1142
BtsIMutI	CAGTG	5 cut(s)	22, 850, 1011, 1142, 1212
Cac8I	GCNNGC	3 cut(s)	333, 407, 1089
CfoI	GCGC	2 cut(s)	200, 585
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	466
CseI	GACGC	4 cut(s)	188, 268, 747, 947
Csp6I	GTAC	5 cut(s)	219, 253, 391, 491, 660
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	8 cut(s)	297, 474, 601, 691, 727, 780, 964, 971
CviQI	GTAC	5 cut(s)	219, 253, 391, 491, 660
DdeI	CTNAG	3 cut(s)	72, 188, 528
DinI	GGCGCC	1 cut(s)	199
DpnI	GATC	8 cut(s)	133, 231, 372, 383, 621, 1002, 1059, 1223
DpnII	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
DraI	TTTAAA	1 cut(s)	666
Eam1104I	CTCTTC	3 cut(s)	114, 1036, 1190
EarI	CTCTTC	3 cut(s)	114, 1036, 1190
EciI	GGCGGA	2 cut(s)	158, 738
Eco130I	CCWWGG	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	567
EcoT22I	ATGCAT	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	199
EheI	GGCGCC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	930
FaeI	CATG	8 cut(s)	300, 477, 604, 694, 730, 783, 967, 974
FalI	AAGNNNNNCTT	4 cut(s)	50, 82, 377, 409
FaqI	GGGAC	1 cut(s)	858
FatI	CATG	8 cut(s)	296, 473, 600, 690, 726, 779, 963, 970
FbaI	TGATCA	2 cut(s)	381, 1057
Fnu4HI	GCNGC	4 cut(s)	362, 732, 735, 744
FokI	GGATG	5 cut(s)	49, 352, 762, 968, 1061
Fsp4HI	GCNGC	4 cut(s)	362, 732, 735, 744
FspBI	CTAG	1 cut(s)	1175
GlaI	GCGC	2 cut(s)	199, 584
GluI	GCNGC	4 cut(s)	362, 732, 735, 744
GsuI	CTGGAG	2 cut(s)	668, 911
HaeII	RGCGCY	1 cut(s)	201
HapII	CCGG	5 cut(s)	195, 222, 789, 927, 1144
HgaI	GACGC	4 cut(s)	188, 268, 747, 947
HhaI	GCGC	2 cut(s)	200, 585
Hin1I	GRCGYC	4 cut(s)	180, 198, 939, 1070
Hin1II	CATG	8 cut(s)	300, 477, 604, 694, 730, 783, 967, 974
Hin6I	GCGC	2 cut(s)	198, 583
HinP1I	GCGC	2 cut(s)	198, 583
HinfI	GANTC	3 cut(s)	76, 868, 881
HpaII	CCGG	5 cut(s)	195, 222, 789, 927, 1144
HphI	GGTGA	3 cut(s)	355, 533, 583
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	4 cut(s)	103, 531, 630, 861
Hpy188III	TCNNGA	6 cut(s)	227, 461, 890, 1061, 1079, 1225
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	343, 664
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	563, 740, 743, 806
HpyF3I	CTNAG	3 cut(s)	72, 188, 528
HpySE526I	ACGT	1 cut(s)	1070
Hsp92I	GRCGYC	4 cut(s)	180, 198, 939, 1070
Hsp92II	CATG	8 cut(s)	300, 477, 604, 694, 730, 783, 967, 974
HspAI	GCGC	2 cut(s)	198, 583
KasI	GGCGCC	1 cut(s)	197
Ksp22I	TGATCA	2 cut(s)	381, 1057
Kzo9I	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
LmnI	GCTCC	4 cut(s)	52, 197, 649, 751
Lsp1109I	GCAGC	2 cut(s)	373, 730
MaeI	CTAG	1 cut(s)	1175
MaeII	ACGT	1 cut(s)	1070
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	8 cut(s)	133, 231, 372, 383, 621, 1002, 1059, 1223
MboI	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
MboII	GAAGA	7 cut(s)	131, 215, 286, 544, 1053, 1207, 1231
MluCI	AATT	9 cut(s)	97, 111, 374, 434, 624, 909, 1015, 1107, 1190
Mly113I	GGCGCC	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	291, 933
MnlI	CCTC	9 cut(s)	276, 310, 316, 330, 457, 835, 886, 1030, 1151
Mph1103I	ATGCAT	1 cut(s)	479
MseI	TTAA	6 cut(s)	665, 836, 912, 945, 975, 1019
MslI	CAYNNNNRTG	3 cut(s)	695, 725, 903
MspI	CCGG	5 cut(s)	195, 222, 789, 927, 1144
MspR9I	CCNGG	1 cut(s)	1145
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	4 cut(s)	563, 740, 743, 806
NarI	GGCGCC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	1145
NdeII	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
NlaIII	CATG	8 cut(s)	300, 477, 604, 694, 730, 783, 967, 974
NlaIV	GGNNCC	4 cut(s)	13, 199, 808, 931
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	1066
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	1 cut(s)	604
PfeI	GAWTC	3 cut(s)	76, 868, 881
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	363, 733, 736, 745
PluTI	GGCGCC	1 cut(s)	201
PspN4I	GGNNCC	4 cut(s)	13, 199, 808, 931
PspPI	GGNCC	1 cut(s)	466
PstI	CTGCAG	1 cut(s)	428
RsaI	GTAC	5 cut(s)	220, 254, 392, 492, 661
RsaNI	GTAC	5 cut(s)	219, 253, 391, 491, 660
RseI	CAYNNNNRTG	3 cut(s)	695, 725, 903
SaqAI	TTAA	6 cut(s)	665, 836, 912, 945, 975, 1019
SatI	GCNGC	4 cut(s)	362, 732, 735, 744
Sau3AI	GATC	8 cut(s)	131, 229, 370, 381, 619, 1000, 1057, 1221
Sau96I	GGNCC	1 cut(s)	466
ScaI	AGTACT	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	1145
SfcI	CTRYAG	1 cut(s)	424
SfoI	GGCGCC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	3 cut(s)	695, 725, 903
Sse9I	AATT	9 cut(s)	97, 111, 374, 434, 624, 909, 1015, 1107, 1190
SsiI	CCGC	6 cut(s)	143, 214, 551, 731, 734, 749
SspDI	GGCGCC	1 cut(s)	197
SspMI	CTAG	1 cut(s)	1175
StyD4I	CCNGG	1 cut(s)	1143
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	1073
TaqI	TCGA	4 cut(s)	177, 509, 622, 917
TasI	AATT	9 cut(s)	97, 111, 374, 434, 624, 909, 1015, 1107, 1190
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	734, 737
TfiI	GAWTC	3 cut(s)	76, 868, 881
Tru1I	TTAA	6 cut(s)	665, 836, 912, 945, 975, 1019
Tru9I	TTAA	6 cut(s)	665, 836, 912, 945, 975, 1019
TscAI	CASTG	5 cut(s)	22, 857, 1011, 1142, 1212
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	2 cut(s)	361, 743
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	4 cut(s)	362, 462, 679, 894
TspRI	CASTG	5 cut(s)	22, 857, 1011, 1142, 1212
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	2 cut(s)	111, 624
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XspI	CTAG	1 cut(s)	1175
ZraI	GACGTC	1 cut(s)	1071
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.