Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Reverse (-)

325750 .. 331644

Gene Structure 5895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGTCATAGTCATACTAGTTTGTGGGCGAACGCAAACCTGGTGAGGGCGACAAGAGTGAGCCAATTCAAGAACTATAACAACGTACATGTCACTTCCACCGCTTGGCACTGCCGCTGCTTCGTTGCCCATCATCATCATCATCATCATCGTCCTCTTGATCTTGTGGTCCAGGACGATCTCCACTCCTTCTTGCAGATTCTTCCGCATGATTTACATGACCATCTCCTCAATGAATCCAAGAGATCTCAACTCTTAGAGGTCATATTGGATTTAGGTCGTTTTCCGGAAGCACGATATCTTGGTGAACCTGGGGGTCAATATCTGAGGGGAACTGTGGTATCACTGCAAGAGTTGGAGCATGCTCAAAATGAAGTTGGAGATTTTGGAGGGGACAATAGAGCTGGCATTGAGGGTACGTTGCATAGAATATCCGCTATTAGGAGTAGGAATGGAATGATAGTTGGATTGACTTGCCGAGTCGGAAGGGCAATCAGTGGTCACATTGACATGGTTAATGATCTGCTTCAATATGGGAAGAGCATCTTGTTTGTTGGAAAGCCTGGGGTCGGCAAGACCACTGTTTTGCGAGAAATTGCTCGTGTTTTGTCAGATGAATTTCACAAAAGAGTGGTTATTGTGGATACAAGCAATGAAATAGCAGGGGATGGAAATATTCCACATGCATCAATAGGAGGTGCACGAAGAATGCAGGTAGCAGAACCATCCTTGCAACACAAAGTCATGATAGAGGCTGTGGAGAATCACATGCCTGAGGTCATCATTGTTGATGAGATTGGCACGGAAACTGAAGCTCTTGCATGTCGCTCAATTGCTCAGAGAGGTGTCATGCTTATTGCTACTGCTCATGGACAGCAGCTTGAGAATATAATGAAGAATCCTACTCTATCTGACCTGATTGGAGGAGTAGAAACTGTTACTTTGGGGGATGATGAAGCCAAAGCTAGAAAATGCCAGAAAACCATTCTTGAGAGGCAAGCGCCTCCAACGTTTGAATTCTTGATTGAGATGAGACACAGACACTATTGGGTTACCCATCAGACAGAAAAGAGTGTAGATATATTGCTTCGTGGCAAAAGTCCACAGGTTGAGGTCAGGACAAGGGATGATAATTTGAAGGTTGTAATTGAAAGATCAAAGGCATATCATAAATGTGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

394

Amino Acids

44.17

Weight (kDa)

6.83

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spore_III_AA	PF19568	158 - 308	1.1e-13	Sporulation stage III, protein AA
AAA_30	PF13604	171 - 315	1.3e-06	AAA domain
AAA	PF00004	182 - 267	4.7e-06	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	4 cut(s)	102, 115, 206, 435
AclI	AACGTT	1 cut(s)	1010
AcsI	RAATTY	2 cut(s)	617, 1016
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	87, 418
AfiI	CCNNNNNNNGG	4 cut(s)	46, 105, 441, 569
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	70, 530, 1016, 1138, 1151
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	4 cut(s)	39, 171, 310, 562
AluBI	AGCT	4 cut(s)	404, 815, 880, 965
AluI	AGCT	4 cut(s)	404, 815, 880, 965
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	1027
Alw44I	GTGCAC	1 cut(s)	699
Aor13HI	TCCGGA	1 cut(s)	286
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	117, 877
ApoI	RAATTY	2 cut(s)	617, 1016
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
AspLEI	GCGC	1 cut(s)	1003
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	55, 317
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	703
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BauI	CACGAG	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	104, 889
BccI	CCATC	5 cut(s)	138, 231, 662, 733, 1065
BciT130I	CCWGG	4 cut(s)	41, 173, 312, 564
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	1027
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	2 cut(s)	18, 966
BfoI	RGCGCY	1 cut(s)	1004
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	245
BisI	GCNGC	3 cut(s)	115, 118, 878
BlsI	GCNGC	3 cut(s)	116, 119, 879
Bme1390I	CCNGG	4 cut(s)	41, 173, 312, 564
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	4 cut(s)	41, 173, 312, 564
BmsI	GCATC	3 cut(s)	552, 695, 1168
BpuEI	CTTGAG	2 cut(s)	902, 1010
BsaJI	CCNNGG	2 cut(s)	311, 563
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 105, 441, 569
Bse21I	CCTNAGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	658
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	4 cut(s)	41, 173, 312, 564
BseDI	CCNNGG	2 cut(s)	311, 563
BseGI	GGATG	4 cut(s)	673, 725, 955, 1132
BseLI	CCNNNNNNNGG	4 cut(s)	46, 105, 441, 569
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	3 cut(s)	317, 765, 851
BseRI	GAGGAG	2 cut(s)	218, 939
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	104, 889
BsiHKAI	GWGCWC	1 cut(s)	703
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	46, 105, 441, 569
BsmAI	GTCTC	1 cut(s)	1027
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	5 cut(s)	160, 178, 245, 520, 1154
BspACI	CCGC	4 cut(s)	102, 115, 206, 435
BspCNI	CTCAG	3 cut(s)	318, 766, 850
BspEI	TCCGGA	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	703
BspQI	GCTCTTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	658
BssECI	CCNNGG	2 cut(s)	311, 563
BssMI	GATC	5 cut(s)	160, 178, 245, 520, 1154
BssSI	CACGAG	1 cut(s)	600
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	4 cut(s)	41, 173, 312, 564
Bst4CI	ACNGT	3 cut(s)	337, 583, 937
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	363, 406, 999
BstDEI	CTNAG	4 cut(s)	256, 326, 774, 837
BstEII	GGTNACC	1 cut(s)	1051
BstF5I	GGATG	4 cut(s)	673, 725, 955, 1132
BstH2I	RGCGCY	1 cut(s)	1004
BstHHI	GCGC	1 cut(s)	1003
BstKTI	GATC	5 cut(s)	163, 181, 248, 523, 1157
BstMAI	GTCTC	1 cut(s)	1027
BstMBI	GATC	5 cut(s)	160, 178, 245, 520, 1154
BstNI	CCWGG	4 cut(s)	41, 173, 312, 564
BstNSI	RCATGY	5 cut(s)	92, 365, 686, 772, 825
BstPI	GGTNACC	1 cut(s)	1051
BstSCI	CCNGG	4 cut(s)	39, 171, 310, 562
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	104, 889
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	774
BsuI	GTATCC	1 cut(s)	637
BtsCI	GGATG	4 cut(s)	673, 725, 955, 1132
BtsI	GCAGTG	2 cut(s)	109, 344
BtsIMutI	CAGTG	4 cut(s)	109, 344, 502, 579
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	363, 406, 999
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	1 cut(s)	1003
Cfr13I	GGNCC	1 cut(s)	169
CsiI	ACCWGGT	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	86, 417
CviJI	RGCY	8 cut(s)	63, 404, 562, 755, 815, 880, 959, 965
CviKI_1	RGCY	8 cut(s)	63, 404, 562, 755, 815, 880, 959, 965
CviQI	GTAC	2 cut(s)	86, 417
DdeI	CTNAG	4 cut(s)	256, 326, 774, 837
DpnI	GATC	5 cut(s)	162, 180, 247, 522, 1156
DpnII	GATC	5 cut(s)	160, 178, 245, 520, 1154
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	831
Eco81I	CCTNAGG	1 cut(s)	774
Eco91I	GGTNACC	1 cut(s)	1051
EcoO65I	GGTNACC	1 cut(s)	1051
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	4 cut(s)	39, 171, 310, 562
EcoRV	GATATC	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	688
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	407
Fnu4HI	GCNGC	3 cut(s)	115, 118, 878
FokI	GGATG	4 cut(s)	680, 712, 962, 1139
Fsp4HI	GCNGC	3 cut(s)	115, 118, 878
FspBI	CTAG	2 cut(s)	18, 966
GlaI	GCGC	1 cut(s)	1002
GluI	GCNGC	3 cut(s)	115, 118, 878
HaeII	RGCGCY	1 cut(s)	1004
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	1003
Hin6I	GCGC	1 cut(s)	1001
HinP1I	GCGC	1 cut(s)	1001
HinfI	GANTC	6 cut(s)	4, 199, 236, 480, 763, 898
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	55, 317
Hpy166II	GTNNAC	3 cut(s)	308, 701, 1103
Hpy188I	TCNGA	6 cut(s)	327, 485, 613, 840, 913, 1062
Hpy188III	TCNNGA	7 cut(s)	70, 158, 287, 745, 989, 1021, 1117
Hpy8I	GTNNAC	3 cut(s)	308, 701, 1103
HpyAV	CCTTC	3 cut(s)	199, 480, 1132
HpyCH4III	ACNGT	3 cut(s)	337, 583, 937
HpyCH4IV	ACGT	3 cut(s)	84, 419, 1010
HpyCH4V	TGCA	8 cut(s)	196, 349, 424, 686, 701, 712, 733, 821
HpyF3I	CTNAG	4 cut(s)	256, 326, 774, 837
HpySE526I	ACGT	3 cut(s)	84, 419, 1010
HspAI	GCGC	1 cut(s)	1001
Kpn2I	TCCGGA	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	160, 178, 245, 520, 1154
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	2 cut(s)	104, 889
LweI	GCATC	3 cut(s)	552, 695, 1168
MabI	ACCWGGT	1 cut(s)	39
MaeI	CTAG	2 cut(s)	18, 966
MaeII	ACGT	3 cut(s)	84, 419, 1010
MaeIII	GTNAC	4 cut(s)	91, 500, 937, 1051
MalI	GATC	5 cut(s)	162, 180, 247, 522, 1156
MboI	GATC	5 cut(s)	160, 178, 245, 520, 1154
MboII	GAAGA	4 cut(s)	194, 550, 717, 907
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	7 cut(s)	65, 594, 617, 831, 1016, 1132, 1146
MlyI	GAGTC	2 cut(s)	13, 489
MmeI	TCCRAC	6 cut(s)	336, 358, 445, 463, 535, 1031
Mph1103I	ATGCAT	1 cut(s)	688
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	2 cut(s)	516, 1183
MslI	CAYNNNNRTG	2 cut(s)	509, 1173
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	4 cut(s)	41, 173, 312, 564
MunI	CAATTG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	4 cut(s)	41, 173, 312, 564
NdeII	GATC	5 cut(s)	160, 178, 245, 520, 1154
NmeAIII	GCCGAG	1 cut(s)	503
NmuCI	GTSAC	2 cut(s)	91, 500
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	5 cut(s)	92, 365, 686, 772, 825
PaeI	GCATGC	1 cut(s)	365
PagI	TCATGA	1 cut(s)	744
PciI	ACATGT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	199, 236, 763, 898
PflMI	CCANNNNNTGG	1 cut(s)	105
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	116, 119, 879
PleI	GAGTC	2 cut(s)	12, 488
PpsI	GAGTC	2 cut(s)	12, 488
PscI	ACATGT	1 cut(s)	88
Psp1406I	AACGTT	1 cut(s)	1010
Psp6I	CCWGG	4 cut(s)	39, 171, 310, 562
PspEI	GGTNACC	1 cut(s)	1051
PspGI	CCWGG	4 cut(s)	39, 171, 310, 562
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	87, 418
RsaNI	GTAC	2 cut(s)	86, 417
RseI	CAYNNNNRTG	2 cut(s)	509, 1173
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	516, 1183
SatI	GCNGC	3 cut(s)	115, 118, 878
Sau3AI	GATC	5 cut(s)	160, 178, 245, 520, 1154
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	13, 489
ScrFI	CCNGG	4 cut(s)	41, 173, 312, 564
SduI	GDGCHC	1 cut(s)	703
SexAI	ACCWGGT	1 cut(s)	39
SfaNI	GCATC	3 cut(s)	552, 695, 1168
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	509, 1173
SmlI	CTYRAG	2 cut(s)	881, 989
SmoI	CTYRAG	2 cut(s)	881, 989
SpeI	ACTAGT	1 cut(s)	17
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	7 cut(s)	65, 594, 617, 831, 1016, 1132, 1146
SsiI	CCGC	4 cut(s)	102, 115, 206, 435
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	2 cut(s)	18, 966
StyD4I	CCNGG	4 cut(s)	39, 171, 310, 562
TaaI	ACNGT	3 cut(s)	337, 583, 937
TaiI	ACGT	3 cut(s)	87, 422, 1013
TasI	AATT	7 cut(s)	65, 594, 617, 831, 1016, 1132, 1146
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	199, 236, 763, 898
Tru1I	TTAA	2 cut(s)	516, 1183
Tru9I	TTAA	2 cut(s)	516, 1183
TscAI	CASTG	4 cut(s)	116, 351, 502, 586
TseFI	GTSAC	2 cut(s)	91, 500
TseI	GCWGC	2 cut(s)	117, 877
Tsp45I	GTSAC	2 cut(s)	91, 500
TspDTI	ATGAA	6 cut(s)	249, 387, 630, 669, 908, 969
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	4 cut(s)	116, 351, 502, 586
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	617, 1016
XceI	RCATGY	5 cut(s)	92, 365, 686, 772, 825
XspI	CTAG	2 cut(s)	18, 966
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.