Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

17981161 .. 17981622

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG119900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTCACTCATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAGTTGTGGCAGCAGTTATGGCTGCTCCACTTGTTGCACTGGCCATTGCTGCTGCTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAAGATTGTGAAATTCCTTTCGAGTATCCGGATGATGTAATTCGCTTGATGCAATCCGGAACTGTGATTTCCATTAAGGAATTGGGAGAAATTCAGACGTGTCTCTATCGTGTTGTAAATGACAAAAAATCACTCTTATCCCATCTCAACTCTGTAATTGAGGGTGAAGTAAATCTCAATATGAAAAATATTGAGCGTCTTCTGAAGAACATTAATGAATTGATGGAAAGAACAAGGAATTCCAAGTCCCAGATATTCGAGGCAAGATATGAGGTTTCTACAGGCATCAAGATCACGAGGAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

153

Amino Acids

17.04

Weight (kDa)

5.92

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	2 - 143	4.3e-10	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	181, 209
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	165, 243, 391
AcuI	CTGAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	38
Aor13HI	TCCGGA	2 cut(s)	181, 209
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	7 cut(s)	29, 32, 35, 62, 74, 101, 104
ApoI	RAATTY	3 cut(s)	165, 243, 391
AseI	ATTAAT	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	95
BauI	CACGAG	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	7 cut(s)	16, 22, 44, 61, 74, 88, 91
BccI	CCATC	2 cut(s)	303, 370
BciVI	GTATCC	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	30, 432
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
BlsI	GCNGC	7 cut(s)	31, 34, 37, 64, 76, 103, 106
BmgBI	CACGTC	1 cut(s)	252
BmsI	GCATC	2 cut(s)	192, 447
BpiI	GAAGAC	1 cut(s)	344
BsaWI	WCCGGW	2 cut(s)	181, 209
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	96
BseAI	TCCGGA	2 cut(s)	181, 209
BseGI	GGATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	7 cut(s)	16, 22, 44, 61, 74, 88, 91
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	126, 182, 210
BslFI	GGGAC	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	95
Bsp13I	TCCGGA	2 cut(s)	181, 209
Bsp143I	GATC	1 cut(s)	444
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	31
BspEI	TCCGGA	2 cut(s)	181, 209
BspMAI	CTGCAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	55, 217
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	447
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
BstSFI	CTRYAG	2 cut(s)	30, 432
BstV1I	GCAGC	7 cut(s)	16, 22, 44, 61, 74, 88, 91
BstV2I	GAAGAC	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	38
CseI	GACGC	1 cut(s)	338
CviJI	RGCY	4 cut(s)	35, 74, 95, 125
CviKI_1	RGCY	4 cut(s)	35, 74, 95, 125
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	446
DpnII	GATC	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	391
FaiI	YATR	6 cut(s)	12, 14, 71, 335, 423, 460
FaqI	GGGAC	1 cut(s)	385
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	126, 182, 210
HgaI	GACGC	1 cut(s)	338
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	3 cut(s)	126, 182, 210
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	249, 357
Hpy188III	TCNNGA	4 cut(s)	182, 210, 442, 448
HpyCH4III	ACNGT	2 cut(s)	55, 217
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	32, 51, 89, 205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
HpyF3I	CTNAG	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	251
Kpn2I	TCCGGA	2 cut(s)	181, 209
Kzo9I	GATC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	61, 77, 139, 195, 223, 416, 420
Lsp1109I	GCAGC	7 cut(s)	16, 22, 44, 61, 74, 88, 91
LweI	GCATC	2 cut(s)	192, 447
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	446
MboI	GATC	1 cut(s)	444
MboII	GAAGA	3 cut(s)	167, 344, 370
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	7 cut(s)	165, 192, 233, 243, 309, 371, 391
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	307, 406, 418, 444, 447
Mox20I	TGGCCA	1 cut(s)	95
MroI	TCCGGA	2 cut(s)	181, 209
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	2 cut(s)	228, 366
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	3 cut(s)	126, 182, 210
MwoI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
NdeII	GATC	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	4
OliI	CACNNNNGTG	1 cut(s)	56
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	7 cut(s)	31, 34, 37, 64, 76, 103, 106
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PshBI	ATTAAT	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	228, 366
SatI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
Sau3AI	GATC	1 cut(s)	444
SchI	GAGTC	1 cut(s)	133
SetI	ASST	3 cut(s)	37, 254, 429
SfaNI	GCATC	2 cut(s)	192, 447
SfcI	CTRYAG	2 cut(s)	30, 432
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	7 cut(s)	165, 192, 233, 243, 309, 371, 391
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	55, 217
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	174, 411
TasI	AATT	7 cut(s)	165, 192, 233, 243, 309, 371, 391
Tru1I	TTAA	2 cut(s)	228, 366
Tru9I	TTAA	2 cut(s)	228, 366
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	7 cut(s)	29, 32, 35, 62, 74, 101, 104
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	10, 350, 384
TspRI	CASTG	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	3 cut(s)	165, 243, 391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.