Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8171452.1

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 460

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8171452.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggtcactcatatattgttcattggtgctgcagctgctgagtttgcctgcacagttgtggcggcagttttggctgctccacttgttgcactggccattgccgctgctattatcccaacactagccggacagcattggactctgtcttggattgaagattcggaaatttcttcagggtattctgactctgtaattcgcttaatggaatccaaaactatgcgttccattaaggatttgggagaaattcagacgtatctctgtcgtgttgtaaaggacaaagaatcactcacatccgatctcaattctgtaattgacggagatgaagatatcaacatgaacactattgagcgtcttctgaaggacattaatgagttgaaggaaagagcaaggaatagcaagtccaagatattggaggcaagcaaggaggtttctaagaagataaaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

149

Amino Acids

16.33

Weight (kDa)

5.29

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 102
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	165, 243
AcuI	CTGAAG	2 cut(s)	156, 377
AgsI	TTSAA	2 cut(s)	155, 376
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
ApoI	RAATTY	2 cut(s)	165, 243
AseI	ATTAAT	1 cut(s)	366
BalI	TGGCCA	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	344
BbvI	GCAGC	5 cut(s)	16, 22, 44, 61, 91
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
BlsI	GCNGC	7 cut(s)	31, 34, 37, 64, 76, 103, 106
BpiI	GAAGAC	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	16, 22, 44, 61, 91
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	126
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	2 cut(s)	62, 102
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	49, 418
BstDEI	CTNAG	2 cut(s)	39, 432
BstF5I	GGATG	1 cut(s)	290
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	16, 22, 44, 61, 91
BstV2I	GAAGAC	1 cut(s)	344
BstXI	CCANNNNNNTGG	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	49, 418
CaiI	CAGNNNCTG	1 cut(s)	38
CseI	GACGC	1 cut(s)	338
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	4 cut(s)	35, 74, 95, 125
CviKI_1	RGCY	4 cut(s)	35, 74, 95, 125
DdeI	CTNAG	2 cut(s)	39, 432
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	156, 377
EcoRV	GATATC	1 cut(s)	328
FaeI	CATG	1 cut(s)	337
FaiI	YATR	4 cut(s)	12, 14, 218, 335
FatI	CATG	1 cut(s)	333
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	5 cut(s)	139, 158, 185, 206, 281
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	5 cut(s)	163, 184, 249, 295, 357
HpyAV	CCTTC	2 cut(s)	352, 370
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	32, 51, 89
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
HpyF3I	CTNAG	2 cut(s)	39, 432
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	61, 77, 139, 159
Lsp1109I	GCAGC	5 cut(s)	16, 22, 44, 61, 91
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	162, 167, 335, 344, 448
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	5 cut(s)	165, 192, 243, 301, 309
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	2 cut(s)	133, 179
MnlI	CCTC	2 cut(s)	406, 418
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	200, 228, 366
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	35, 104
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	35, 44, 71, 101
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	337
NmuCI	GTSAC	1 cut(s)	4
OliI	CACNNNNGTG	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	158, 206, 281
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	7 cut(s)	31, 34, 37, 64, 76, 103, 106
PleI	GAGTC	2 cut(s)	133, 179
PpsI	GAGTC	2 cut(s)	133, 179
PshBI	ATTAAT	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	200, 228, 366
SatI	GCNGC	7 cut(s)	30, 33, 36, 63, 75, 102, 105
Sau3AI	GATC	1 cut(s)	295
SchI	GAGTC	2 cut(s)	133, 179
SetI	ASST	3 cut(s)	37, 254, 429
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	5 cut(s)	165, 192, 243, 301, 309
SsiI	CCGC	2 cut(s)	62, 102
SspMI	CTAG	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	254
TasI	AATT	5 cut(s)	165, 192, 243, 301, 309
TauI	GCSGC	2 cut(s)	65, 104
TfiI	GAWTC	3 cut(s)	158, 206, 281
Tru1I	TTAA	3 cut(s)	200, 228, 366
Tru9I	TTAA	3 cut(s)	200, 228, 366
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	5 cut(s)	29, 32, 35, 74, 104
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	10, 336, 350
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	2 cut(s)	165, 243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.