RLG00000014397

UPF0496 protein At4g34320-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004217
Physical Location & Seq
Reverse (-)
52677958 .. 52678676
719 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014397

Sequence Viewer

Length: 615 bp
ATGGGAATGAAGGGAGTGAGAAAGTTAAGTCGAAAGATCTTTAAAAAGATTTGCAAACGTGATGGAGATCTTTGGAGATCTTATGGGGACGCTTGCAAGAATGATGAAGATTTCCTAACTGAACTGGGCAAGTTCCTAGAGTCGTATGAAAAATGTTTGATTCAAATTACGAAGGTGGGAAACAACGACGGAGGAATTGATGATGGTTACATGAGGATTTTGGAGAAATTGAAGAATGTCAAGGGGGCCTCAGGTAGAGTCCATGATCAGCAGTTTGCAGAACAAATGTTGCTCGAAAAGGTTAAATGTTCGATGACGCGGCGAGAAGATTTGCATGAAGAATTGATTAGCCAAAAAGGAAAGCCTCGCAAGAATTACACTGCTCCACTTGTTGCACTGGCCATTGCTGCTACTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAGGATTGTGAAATTCCTTTCGAGTATCCGGATGATGCAATTCGCTTAATGCAATCCGGAACTGTGCTTTCCATTAAGGAATTGGGAGAAATTCAGACGCGTCTCGATCGTGTTGTAAATGACATAAATCACTCTTATCCCATCTCAACTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

205

Amino Acids

23.25

Weight (kDa)

7.61

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 319, 559
AccIII TCCGGA 2 cut(s) 487, 515
AciI CCGC 1 cut(s) 319
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 471, 549
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 164, 232
Alw26I GTCTC 1 cut(s) 566
Aor13HI TCCGGA 2 cut(s) 487, 515
AoxI GGCC 2 cut(s) 246, 399
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 2 cut(s) 471, 549
AspS9I GGNCC 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 250
BalI TGGCCA 1 cut(s) 401
BbvI GCAGC 1 cut(s) 394
BccI CCATC 3 cut(s) 56, 197, 608
BciVI GTATCC 1 cut(s) 495
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 137, 428
BfuI GTATCC 1 cut(s) 495
BglII AGATCT 3 cut(s) 36, 67, 77
BisI GCNGC 2 cut(s) 320, 408
BlsI GCNGC 2 cut(s) 321, 409
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 66
BsaWI WCCGGW 2 cut(s) 487, 515
Bse1I ACTGG 2 cut(s) 129, 402
Bse21I CCTNAGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 66
BseAI TCCGGA 2 cut(s) 487, 515
BseGI GGATG 1 cut(s) 496
BseJI GATNNNNATC 1 cut(s) 66
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 2 cut(s) 129, 402
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 2 cut(s) 319, 559
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 2 cut(s) 248, 401
BsiEI CGRYCG 1 cut(s) 568
BsiSI CCGG 3 cut(s) 432, 488, 516
BslFI GGGAC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 566
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 248, 401
Bsp13I TCCGGA 2 cut(s) 487, 515
Bsp143I GATC 5 cut(s) 36, 67, 77, 265, 565
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 248, 401
BspCNI CTCAG 1 cut(s) 263
BspEI TCCGGA 2 cut(s) 487, 515
BspFNI CGCG 2 cut(s) 319, 559
BspLI GGNNCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 2 cut(s) 129, 402
BssMI GATC 5 cut(s) 36, 67, 77, 265, 565
Bst4CI ACNGT 1 cut(s) 523
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 2 cut(s) 319, 559
BstKTI GATC 5 cut(s) 39, 70, 80, 268, 568
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 5 cut(s) 36, 67, 77, 265, 565
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstUI CGCG 2 cut(s) 319, 559
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 3 cut(s) 36, 67, 77
BstYI RGATCY 3 cut(s) 36, 67, 77
Bsu36I CCTNAGG 1 cut(s) 250
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 2 cut(s) 248, 401
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 378, 395
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 4 cut(s) 98, 325, 548, 565
CviAII CATG 3 cut(s) 211, 263, 335
CviJI RGCY 5 cut(s) 248, 351, 364, 401, 431
CviKI_1 RGCY 5 cut(s) 248, 351, 364, 401, 431
DdeI CTNAG 1 cut(s) 250
DpnI GATC 5 cut(s) 38, 69, 79, 267, 567
DpnII GATC 5 cut(s) 36, 67, 77, 265, 565
DraI TTTAAA 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 399
Eco81I CCTNAGG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 3 cut(s) 214, 266, 338
FaiI YATR 6 cut(s) 84, 147, 212, 264, 336, 584
FaqI GGGAC 1 cut(s) 101
FatI CATG 3 cut(s) 210, 262, 334
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 320, 408
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 2 cut(s) 320, 408
FspBI CTAG 2 cut(s) 137, 428
GluI GCNGC 2 cut(s) 320, 408
HaeIII GGCC 2 cut(s) 248, 401
HapII CCGG 3 cut(s) 432, 488, 516
HgaI GACGC 4 cut(s) 98, 325, 548, 565
Hin1II CATG 3 cut(s) 214, 266, 338
HinfI GANTC 4 cut(s) 140, 160, 258, 445
HpaII CCGG 3 cut(s) 432, 488, 516
Hpy188I TCNGA 1 cut(s) 555
Hpy188III TCNNGA 3 cut(s) 488, 516, 563
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 4, 166
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 7 cut(s) 54, 96, 278, 334, 395, 497, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 214, 266, 338
Kpn2I TCCGGA 2 cut(s) 487, 515
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 5 cut(s) 36, 67, 77, 265, 565
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 110, 237, 383, 445, 501, 529
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 1 cut(s) 484
MaeI CTAG 2 cut(s) 137, 428
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 206
MalI GATC 5 cut(s) 38, 69, 79, 267, 567
MboI GATC 5 cut(s) 36, 67, 77, 265, 565
MboII GAAGA 4 cut(s) 119, 244, 338, 350
MflI RGATCY 3 cut(s) 36, 67, 77
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 9 cut(s) 165, 195, 227, 341, 373, 471, 498, 539, 549
MluI ACGCGT 1 cut(s) 557
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 3 cut(s) 149, 267, 439
MnlI CCTC 5 cut(s) 185, 207, 259, 375, 454
Mox20I TGGCCA 1 cut(s) 401
MroI TCCGGA 2 cut(s) 487, 515
MscI TGGCCA 1 cut(s) 401
MseI TTAA 5 cut(s) 26, 42, 303, 506, 534
Msp20I TGGCCA 1 cut(s) 401
MspI CCGG 3 cut(s) 432, 488, 516
MvnI CGCG 2 cut(s) 319, 559
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 5 cut(s) 36, 67, 77, 265, 565
NlaIII CATG 3 cut(s) 214, 266, 338
NlaIV GGNNCC 1 cut(s) 247
PfeI GAWTC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 448
PkrI GCNGC 2 cut(s) 321, 409
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 3 cut(s) 148, 266, 439
PpsI GAGTC 3 cut(s) 148, 266, 439
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 3 cut(s) 36, 67, 77
PsyI GACNNNGTC 1 cut(s) 448
PvuI CGATCG 1 cut(s) 568
SaqAI TTAA 5 cut(s) 26, 42, 303, 506, 534
SatI GCNGC 2 cut(s) 320, 408
Sau3AI GATC 5 cut(s) 36, 67, 77, 265, 565
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 3 cut(s) 149, 267, 439
SetI ASST 4 cut(s) 61, 177, 256, 303
SfaNI GCATC 1 cut(s) 484
Sse9I AATT 9 cut(s) 165, 195, 227, 341, 373, 471, 498, 539, 549
SsiI CCGC 1 cut(s) 319
SspMI CTAG 2 cut(s) 137, 428
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 61
TaqI TCGA 5 cut(s) 31, 294, 311, 480, 564
TasI AATT 9 cut(s) 165, 195, 227, 341, 373, 471, 498, 539, 549
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 5 cut(s) 26, 42, 303, 506, 534
Tru9I TTAA 5 cut(s) 26, 42, 303, 506, 534
TscAI CASTG 2 cut(s) 385, 402
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 4 cut(s) 23, 120, 162, 351
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 2 cut(s) 385, 402
Tth111I GACNNNGTC 1 cut(s) 448
XapI RAATTY 2 cut(s) 471, 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 2 cut(s) 137, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.