Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGGGAGTGAGAAAGTTAAGTCGAAAGATCTTTAAAAAGATTTGCAAACGTGATGGAGATCTTTGGAGATATTACGAGGACGCTTGCAAGAATGAAGAAGATTTCCTAACTGAACTGGGGAAGTTCCTAGAGTCGTATGAAAAATGTTTGATTCAAATTACGAAGGTGGGAAACAACGACGGAGGAATTGATGATGGTTACATGAGGATTTTGGAGAAATTGAAGAATGTCAAGGGGGCCTCAGGTAGAGTCCATGATCAGCATTTTGCGGAACAAATGTTGCTCGAAAATGTTAAATGTTTGATGAAGCGGCGAGAAGATTTGCATGAAGAATTGATTAGCCAAAAAGGAAAGCCTCGCAAGAAGTATGATTGTACTCGTGCTTGGAGACGCTGTTTGAGGATGGTCACTAATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAGTTGTGGCAGCAGTTATGGCTGCTCCACTTGTTGCACTGGCCGTTGCTGCTACTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAGGATTGTGAAATTCCTTTCGAGTATCCGGATGATGTAATTCGCTTAATGCAATCCGGAACTGTGCTTTCCATTAAGGAATTGGGAGAAATTCAGACGCGTCTCGATCGTGTTGTAAATGACATAAAATCACTCTTATCCCATCTCAACTCTGTAATTGAGGATGAAGTAAATCTCAATATGAAAAGTATTGAGCGTCTTCTCAAGAACATTAATGAATTGATGGAAAGAGCAAGGAATTCCAAGTCCCAGATATTAGAGGCAAGAGATGAGGTTTCTACGAGCATCAAGATCACGAAGGGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

288

Amino Acids

32.9

Weight (kDa)

8.52

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	658
AccIII	TCCGGA	2 cut(s)	586, 614
AciI	CCGC	2 cut(s)	272, 313
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	3 cut(s)	570, 648, 796
AfaI	GTAC	1 cut(s)	379
AflIII	ACRYGT	1 cut(s)	656
AgsI	TTSAA	2 cut(s)	158, 226
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	385, 665
AlwNI	CAGNNNCTG	1 cut(s)	443
Aor13HI	TCCGGA	2 cut(s)	586, 614
AoxI	GGCC	2 cut(s)	240, 498
ApeKI	GCWGC	6 cut(s)	434, 437, 440, 467, 479, 506
ApoI	RAATTY	3 cut(s)	570, 648, 796
AseI	ATTAAT	1 cut(s)	771
AspS9I	GGNCC	1 cut(s)	240
AxyI	CCTNAGG	1 cut(s)	244
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	749
BbvI	GCAGC	6 cut(s)	421, 427, 449, 466, 479, 493
BccI	CCATC	5 cut(s)	50, 191, 400, 708, 775
BceAI	ACGGC	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	594
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	385, 665
BfaI	CTAG	2 cut(s)	131, 527
BfmI	CTRYAG	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	594
BglII	AGATCT	2 cut(s)	30, 61
BisI	GCNGC	7 cut(s)	314, 435, 438, 441, 468, 480, 507
BlsI	GCNGC	7 cut(s)	315, 436, 439, 442, 469, 481, 508
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	852
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	746
BsaBI	GATNNNNATC	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	586, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bse1I	ACTGG	2 cut(s)	123, 501
Bse21I	CCTNAGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	60
BseAI	TCCGGA	2 cut(s)	586, 614
BseGI	GGATG	3 cut(s)	411, 595, 727
BseJI	GATNNNNATC	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	258, 435
BseNI	ACTGG	2 cut(s)	123, 501
BseXI	GCAGC	6 cut(s)	421, 427, 449, 466, 479, 493
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	658
Bsh1285I	CGRYCG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	242, 500
BsiEI	CGRYCG	1 cut(s)	667
BsiSI	CCGG	3 cut(s)	531, 587, 615
BslFI	GGGAC	1 cut(s)	790
BsmAI	GTCTC	2 cut(s)	385, 665
BsmBI	CGTCTC	2 cut(s)	385, 665
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	2 cut(s)	242, 500
Bsp13I	TCCGGA	2 cut(s)	586, 614
Bsp143I	GATC	5 cut(s)	30, 61, 259, 664, 849
BspACI	CCGC	2 cut(s)	272, 313
BspANI	GGCC	2 cut(s)	242, 500
BspCNI	CTCAG	2 cut(s)	257, 436
BspEI	TCCGGA	2 cut(s)	586, 614
BspFNI	CGCG	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	439
BsrI	ACTGG	2 cut(s)	123, 501
BssMI	GATC	5 cut(s)	30, 61, 259, 664, 849
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	460, 622
BstC8I	GCNNGC	2 cut(s)	88, 454
BstDEI	CTNAG	2 cut(s)	244, 444
BstF5I	GGATG	3 cut(s)	411, 595, 727
BstFNI	CGCG	1 cut(s)	658
BstKTI	GATC	5 cut(s)	33, 64, 262, 667, 852
BstMAI	GTCTC	2 cut(s)	385, 665
BstMBI	GATC	5 cut(s)	30, 61, 259, 664, 849
BstMCI	CGRYCG	1 cut(s)	667
BstMWI	GCNNNNNNNGC	4 cut(s)	440, 449, 476, 506
BstSFI	CTRYAG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	658
BstV1I	GCAGC	6 cut(s)	421, 427, 449, 466, 479, 493
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	2 cut(s)	30, 61
BstYI	RGATCY	2 cut(s)	30, 61
Bsu36I	CCTNAGG	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	2 cut(s)	242, 500
BtsCI	GGATG	3 cut(s)	411, 595, 727
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	88, 454
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	5 cut(s)	92, 402, 647, 664, 743
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	3 cut(s)	205, 257, 329
CviJI	RGCY	7 cut(s)	242, 345, 358, 440, 479, 500, 530
CviKI_1	RGCY	7 cut(s)	242, 345, 358, 440, 479, 500, 530
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	2 cut(s)	244, 444
DpnI	GATC	5 cut(s)	32, 63, 261, 666, 851
DpnII	GATC	5 cut(s)	30, 61, 259, 664, 849
DraI	TTTAAA	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	796
Esp3I	CGTCTC	2 cut(s)	385, 665
FaeI	CATG	3 cut(s)	208, 260, 332
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	3 cut(s)	204, 256, 328
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	314, 435, 438, 441, 468, 480, 507
FokI	GGATG	3 cut(s)	418, 602, 734
Fsp4HI	GCNGC	7 cut(s)	314, 435, 438, 441, 468, 480, 507
FspBI	CTAG	2 cut(s)	131, 527
GluI	GCNGC	7 cut(s)	314, 435, 438, 441, 468, 480, 507
HaeIII	GGCC	2 cut(s)	242, 500
HapII	CCGG	3 cut(s)	531, 587, 615
HgaI	GACGC	5 cut(s)	92, 402, 647, 664, 743
Hin1II	CATG	3 cut(s)	208, 260, 332
HinfI	GANTC	4 cut(s)	134, 154, 252, 544
HpaII	CCGG	3 cut(s)	531, 587, 615
Hpy188I	TCNGA	1 cut(s)	654
Hpy188III	TCNNGA	6 cut(s)	587, 615, 662, 763, 847, 853
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	160, 850
HpyCH4III	ACNGT	2 cut(s)	460, 622
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	48, 90, 328, 437, 456, 494, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	440, 449, 476, 506
HpyF3I	CTNAG	2 cut(s)	244, 444
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	208, 260, 332
Kpn2I	TCCGGA	2 cut(s)	586, 614
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	30, 61, 259, 664, 849
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	104, 231, 466, 482, 544, 600, 628, 821
Lsp1109I	GCAGC	6 cut(s)	421, 427, 449, 466, 479, 493
LweI	GCATC	1 cut(s)	852
MaeI	CTAG	2 cut(s)	131, 527
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	200, 409
MalI	GATC	5 cut(s)	32, 63, 261, 666, 851
MboI	GATC	5 cut(s)	30, 61, 259, 664, 849
MboII	GAAGA	6 cut(s)	110, 113, 238, 332, 344, 749
MflI	RGATCY	2 cut(s)	30, 61
MluI	ACGCGT	1 cut(s)	656
MlyI	GAGTC	3 cut(s)	143, 261, 538
MroI	TCCGGA	2 cut(s)	586, 614
MseI	TTAA	6 cut(s)	20, 36, 297, 605, 633, 771
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	3 cut(s)	531, 587, 615
MvnI	CGCG	1 cut(s)	658
MwoI	GCNNNNNNNGC	4 cut(s)	440, 449, 476, 506
NdeII	GATC	5 cut(s)	30, 61, 259, 664, 849
NlaIII	CATG	3 cut(s)	208, 260, 332
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	547
PkrI	GCNGC	7 cut(s)	315, 436, 439, 442, 469, 481, 508
Ple19I	CGATCG	1 cut(s)	667
PleI	GAGTC	3 cut(s)	142, 260, 538
PpsI	GAGTC	3 cut(s)	142, 260, 538
PshBI	ATTAAT	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	30, 61
PsyI	GACNNNGTC	1 cut(s)	547
PvuI	CGATCG	1 cut(s)	667
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	6 cut(s)	20, 36, 297, 605, 633, 771
SatI	GCNGC	7 cut(s)	314, 435, 438, 441, 468, 480, 507
Sau3AI	GATC	5 cut(s)	30, 61, 259, 664, 849
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	3 cut(s)	143, 261, 538
SetI	ASST	5 cut(s)	55, 171, 250, 442, 834
SfaNI	GCATC	1 cut(s)	852
SfcI	CTRYAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
SsiI	CCGC	2 cut(s)	272, 313
SspMI	CTAG	2 cut(s)	131, 527
TaaI	ACNGT	2 cut(s)	460, 622
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	4 cut(s)	25, 288, 579, 663
TatI	WGTACW	1 cut(s)	377
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	6 cut(s)	20, 36, 297, 605, 633, 771
Tru9I	TTAA	6 cut(s)	20, 36, 297, 605, 633, 771
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	6 cut(s)	434, 437, 440, 467, 479, 506
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	9 cut(s)	17, 111, 156, 323, 345, 415, 738, 755, 789
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	501
Tth111I	GACNNNGTC	1 cut(s)	547
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	3 cut(s)	570, 648, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	2 cut(s)	131, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.