Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

184904 .. 185508

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgggaatgaagggagtgagaaagtacttaagtcgaaagatcttcaaaaacattcaaattacgaaggtgggaaacaacgacggaggaattgatgatggttacatgaggactttggagaaattgaagaatgtcaaggggccctcaggtagagtccatgatcagcattttgcagaacaaatgttgctcgaaaaggttaaatgtttgatgacgcggcgagaagatttgcatgaagaattgattagccaaaaaggaaaacctcgcaagaagtatgattgtattcgtgcttggagacgctgtttaaggatggtcactcatatattgttcattggtgctgcagctgctgagtttgcctgcacagttgtggcagcagttatggctgctccacttgttgcactggccattgctgctgctattatcccaacactagccggacagcattggactgatggactctgtcttggattgaagattgtgaaattcctttcgagtatccggatgatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

167

Amino Acids

18.7

Weight (kDa)

9.9

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	46, 56, 124, 466
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	2 cut(s)	137, 396
ApaI	GGGCCC	1 cut(s)	141
ApeKI	GCWGC	7 cut(s)	332, 335, 338, 365, 377, 404, 407
ApoI	RAATTY	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	137, 138
AxyI	CCTNAGG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	141
BbvI	GCAGC	7 cut(s)	319, 325, 347, 364, 377, 391, 394
BccI	CCATC	3 cut(s)	89, 298, 440
BciVI	GTATCC	1 cut(s)	500
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	333
BfrI	CTTAAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	8 cut(s)	212, 333, 336, 339, 366, 378, 405, 408
BlsI	GCNGC	8 cut(s)	213, 334, 337, 340, 367, 379, 406, 409
BmcAI	AGTACT	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	137, 138
BmiI	GGNNCC	2 cut(s)	138, 139
BsaWI	WCCGGW	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	492
BseGI	GGATG	2 cut(s)	309, 501
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	156, 333
BseNI	ACTGG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	7 cut(s)	319, 325, 347, 364, 377, 391, 394
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	139, 398
BsiSI	CCGG	2 cut(s)	429, 493
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	139, 398
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	39, 157
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	139, 398
BspCNI	CTCAG	2 cut(s)	155, 334
BspEI	TCCGGA	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	138, 139
BspMAI	CTGCAG	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	2 cut(s)	39, 157
Bst4CI	ACNGT	1 cut(s)	358
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	142, 342
BstF5I	GGATG	2 cut(s)	309, 501
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	42, 160
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	39, 157
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 347, 374, 404
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	7 cut(s)	319, 325, 347, 364, 377, 391, 394
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	139, 398
BtsCI	GGATG	2 cut(s)	309, 501
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	137, 138
CseI	GACGC	2 cut(s)	217, 300
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	103, 155, 227
CviJI	RGCY	6 cut(s)	139, 243, 338, 377, 398, 428
CviKI_1	RGCY	6 cut(s)	139, 243, 338, 377, 398, 428
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	142, 342
DpnI	GATC	2 cut(s)	41, 159
DpnII	GATC	2 cut(s)	39, 157
EaeI	YGGCCR	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	142
EcoO109I	RGGNCCY	2 cut(s)	137, 138
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	106, 158, 230
FaiI	YATR	7 cut(s)	104, 156, 228, 270, 315, 317, 374
FatI	CATG	3 cut(s)	102, 154, 226
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	8 cut(s)	212, 333, 336, 339, 366, 378, 405, 408
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	8 cut(s)	212, 333, 336, 339, 366, 378, 405, 408
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	8 cut(s)	212, 333, 336, 339, 366, 378, 405, 408
HaeIII	GGCC	2 cut(s)	139, 398
HapII	CCGG	2 cut(s)	429, 493
HgaI	GACGC	2 cut(s)	217, 300
Hin1II	CATG	3 cut(s)	106, 158, 230
HinfI	GANTC	2 cut(s)	150, 450
HpaII	CCGG	2 cut(s)	429, 493
Hpy188III	TCNNGA	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	4, 58
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	170, 226, 335, 354, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 347, 374, 404
HpyF3I	CTNAG	2 cut(s)	142, 342
Hsp92II	CATG	3 cut(s)	106, 158, 230
Kpn2I	TCCGGA	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	39, 157
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	4 cut(s)	129, 364, 380, 442
Lsp1109I	GCAGC	7 cut(s)	319, 325, 347, 364, 377, 391, 394
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	98, 307
MalI	GATC	2 cut(s)	41, 159
MboI	GATC	2 cut(s)	39, 157
MboII	GAAGA	5 cut(s)	34, 136, 230, 242, 478
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	57, 87, 119, 233, 476
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	2 cut(s)	159, 444
MnlI	CCTC	4 cut(s)	77, 99, 151, 267
Mox20I	TGGCCA	1 cut(s)	398
MroI	TCCGGA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	3 cut(s)	29, 195, 299
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	2 cut(s)	429, 493
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	4 cut(s)	338, 347, 374, 404
NdeII	GATC	2 cut(s)	39, 157
NlaIII	CATG	3 cut(s)	106, 158, 230
NlaIV	GGNNCC	2 cut(s)	138, 139
NmuCI	GTSAC	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	359
PflFI	GACNNNGTC	1 cut(s)	453
PkrI	GCNGC	8 cut(s)	213, 334, 337, 340, 367, 379, 406, 409
PleI	GAGTC	2 cut(s)	158, 444
PpsI	GAGTC	2 cut(s)	158, 444
PspN4I	GGNNCC	2 cut(s)	138, 139
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	137, 138
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	29, 195, 299
SatI	GCNGC	8 cut(s)	212, 333, 336, 339, 366, 378, 405, 408
Sau3AI	GATC	2 cut(s)	39, 157
Sau96I	GGNCC	2 cut(s)	137, 138
ScaI	AGTACT	1 cut(s)	26
SchI	GAGTC	2 cut(s)	159, 444
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	69, 148, 195, 259, 340
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	57, 87, 119, 233, 476
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	34, 186, 485
TasI	AATT	5 cut(s)	57, 87, 119, 233, 476
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	29, 195, 299
Tru9I	TTAA	3 cut(s)	29, 195, 299
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	7 cut(s)	332, 335, 338, 365, 377, 404, 407
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	23, 243, 313
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	28
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.