Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003237.1

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

79536 .. 81172

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003237.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgggaatgaagggagtgagaaagttaagtcgaaagatcttcaaaaacgtttgcaaacgtgatggagatctgtggagatcatacgaggacgcttgcaagaatgaaaaggatttcctaactgaactggacaagttcctagagtcgtataagaaatgtttgattcaaattaatgacgacagaggaattgatgatggttacatgaggattttggagaaattgaaaaatgtcaagggggcctcaggtagagtctatgatcagcaatttgcatatcaaattttgcccaaaaaggttgaatgtttgttgacgcagcgacgagatttgcaaaaagaattgaatgaccgaataccaaagcctcgcaagaagtatgattgtactcgtgcttggagacgctgtttgaggacggtcactcatatattgttcattggtgctgcagctgctgagtttgcctgcacagttgtggcagcagttatggctgctccacttgttgcactggccattgcagctgctattatcccaacactagccggacagcattggactctgtcttggattgaagattctgaaattcctttagagtattctgagtctgtaattcgcttaatgcaatccggaactgtgctttccattaaggaattgggagaaattcggacgtatctcggtagagttgtaaaggacatagaatcactcttatcccatctcaattctgtaattgaggaagatgaagatatcaatatgaaaattattgagcgtcttctaaaggacattaatgagttgaaggaaagagcaaggaatagcaagtccaagatattgaaggcatgcgatgaggagtccaaatccattggtggaaccactagaactggctggaaaatcactgaaccaaccaccagaagtcctgaaccggcccctttgtcagcctcgctcgcttcagctgctagcctcgcctccagccgccatttgccgagactgttagcctcatctcaacagcacagcgccccagcacctgttattacaggagccgccccggatttcaccttgaaatccaaagtggccctgcggggcccaccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

355

Amino Acids

39.74

Weight (kDa)

9.25

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	3 cut(s)	949, 1017, 1054
AclI	AACGTT	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	273, 564, 642
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	1 cut(s)	373
AgsI	TTSAA	9 cut(s)	43, 164, 220, 293, 334, 554, 775, 811, 1036
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	434, 503, 929
AluI	AGCT	3 cut(s)	434, 503, 929
Alw26I	GTCTC	2 cut(s)	379, 955
AlwNI	CAGNNNCTG	2 cut(s)	437, 1001
Aor13HI	TCCGGA	1 cut(s)	608
AoxI	GGCC	5 cut(s)	234, 492, 900, 1047, 1057
ApaI	GGGCCC	1 cut(s)	1061
ApeKI	GCWGC	9 cut(s)	307, 428, 431, 434, 461, 473, 500, 503, 929
ApoI	RAATTY	3 cut(s)	273, 564, 642
AseI	ATTAAT	2 cut(s)	168, 765
AspLEI	GCGC	1 cut(s)	992
AspS9I	GGNCC	5 cut(s)	234, 901, 1048, 1057, 1058
AsuC2I	CCSGG	1 cut(s)	1022
AsuHPI	GGTGA	1 cut(s)	1021
AsuNHI	GCTAGC	1 cut(s)	932
AxyI	CCTNAGG	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	1061
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	1061
BauI	CACGAG	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	9 cut(s)	319, 415, 421, 443, 460, 473, 490, 512, 916
BccI	CCATC	3 cut(s)	56, 185, 702
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	1022
BcoDI	GTCTC	2 cut(s)	379, 955
BfaI	CTAG	4 cut(s)	137, 521, 852, 933
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	993
BglII	AGATCT	2 cut(s)	36, 67
Bme1390I	CCNGG	1 cut(s)	1022
BmgT120I	GGNCC	5 cut(s)	234, 901, 1048, 1057, 1058
BmiI	GGNNCC	6 cut(s)	235, 847, 903, 1015, 1058, 1059
BmrFI	CCNGG	1 cut(s)	1022
BmtI	GCTAGC	1 cut(s)	936
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	928
BpuMI	CCSGG	1 cut(s)	1022
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	1020
BsaWI	WCCGGW	1 cut(s)	608
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bse118I	RCCGGY	1 cut(s)	898
Bse1I	ACTGG	3 cut(s)	129, 495, 862
Bse21I	CCTNAGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	1020
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	3 cut(s)	252, 429, 573
BseNI	ACTGG	3 cut(s)	129, 495, 862
BseRI	GAGGAG	1 cut(s)	839
BseSI	GKGCMC	1 cut(s)	1061
BseXI	GCAGC	9 cut(s)	319, 415, 421, 443, 460, 473, 490, 512, 916
BseYI	CCCAGC	1 cut(s)	994
BsgI	GTGCAG	1 cut(s)	433
BshFI	GGCC	5 cut(s)	236, 494, 902, 1049, 1059
BsiSI	CCGG	4 cut(s)	525, 609, 899, 1022
BsmAI	GTCTC	2 cut(s)	379, 955
BsmBI	CGTCTC	1 cut(s)	379
BsnI	GGCC	5 cut(s)	236, 494, 902, 1049, 1059
Bsp120I	GGGCCC	1 cut(s)	1057
Bsp1286I	GDGCHC	1 cut(s)	1061
Bsp13I	TCCGGA	1 cut(s)	608
Bsp143I	GATC	4 cut(s)	36, 67, 77, 253
BspACI	CCGC	3 cut(s)	949, 1017, 1054
BspANI	GGCC	5 cut(s)	236, 494, 902, 1049, 1059
BspCNI	CTCAG	3 cut(s)	251, 430, 574
BspEI	TCCGGA	1 cut(s)	608
BspLI	GGNNCC	6 cut(s)	235, 847, 903, 1015, 1058, 1059
BspMAI	CTGCAG	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	129, 495, 862
BssAI	RCCGGY	1 cut(s)	898
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	4 cut(s)	36, 67, 77, 253
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
Bst4CI	ACNGT	4 cut(s)	403, 454, 616, 966
BstC8I	GCNNGC	5 cut(s)	94, 448, 817, 921, 934
BstDEI	CTNAG	4 cut(s)	238, 438, 582, 1065
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	1 cut(s)	992
BstKTI	GATC	4 cut(s)	39, 70, 80, 256
BstMAI	GTCTC	2 cut(s)	379, 955
BstMBI	GATC	4 cut(s)	36, 67, 77, 253
BstMWI	GCNNNNNNNGC	7 cut(s)	434, 443, 470, 500, 920, 929, 938
BstNSI	RCATGY	1 cut(s)	819
BstSCI	CCNGG	1 cut(s)	1020
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	1061
BstV1I	GCAGC	9 cut(s)	319, 415, 421, 443, 460, 473, 490, 512, 916
BstV2I	GAAGAC	1 cut(s)	743
BstX2I	RGATCY	2 cut(s)	36, 67
BstYI	RGATCY	2 cut(s)	36, 67
Bsu36I	CCTNAGG	1 cut(s)	238
BsuRI	GGCC	5 cut(s)	236, 494, 902, 1049, 1059
BtgZI	GCGATG	1 cut(s)	834
BtsIMutI	CAGTG	2 cut(s)	488, 870
Cac8I	GCNNGC	5 cut(s)	94, 448, 817, 921, 934
CaiI	CAGNNNCTG	2 cut(s)	437, 1001
CfoI	GCGC	1 cut(s)	992
Cfr10I	RCCGGY	1 cut(s)	898
Cfr13I	GGNCC	5 cut(s)	234, 901, 1048, 1057, 1058
CseI	GACGC	4 cut(s)	98, 313, 396, 737
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	199, 816
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	4 cut(s)	238, 438, 582, 1065
DpnI	GATC	4 cut(s)	38, 69, 79, 255
DpnII	GATC	4 cut(s)	36, 67, 77, 253
EaeI	YGGCCR	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	1061
Eco32I	GATATC	1 cut(s)	727
Eco57I	CTGAAG	1 cut(s)	909
Eco81I	CCTNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	2 cut(s)	234, 1057
EcoRV	GATATC	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	1061
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	202, 819
FatI	CATG	2 cut(s)	198, 815
FauI	CCCGC	1 cut(s)	1047
FbaI	TGATCA	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	1061
FspBI	CTAG	4 cut(s)	137, 521, 852, 933
GlaI	GCGC	1 cut(s)	991
GsaI	CCCAGC	1 cut(s)	998
GsuI	CTGGAG	1 cut(s)	928
HaeII	RGCGCY	1 cut(s)	993
HaeIII	GGCC	5 cut(s)	236, 494, 902, 1049, 1059
HapII	CCGG	4 cut(s)	525, 609, 899, 1022
HgaI	GACGC	4 cut(s)	98, 313, 396, 737
HhaI	GCGC	1 cut(s)	992
Hin1II	CATG	2 cut(s)	202, 819
Hin6I	GCGC	1 cut(s)	990
HinP1I	GCGC	1 cut(s)	990
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	8 cut(s)	140, 160, 246, 538, 557, 584, 680, 827
HpaII	CCGG	4 cut(s)	525, 609, 899, 1022
HphI	GGTGA	1 cut(s)	1021
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	3 cut(s)	562, 583, 648
Hpy188III	TCNNGA	2 cut(s)	609, 893
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	3 cut(s)	4, 769, 805
HpyCH4III	ACNGT	4 cut(s)	403, 454, 616, 966
HpyCH4IV	ACGT	3 cut(s)	48, 58, 650
HpyCH4V	TGCA	9 cut(s)	54, 96, 266, 322, 431, 450, 488, 500, 604
HpyF10VI	GCNNNNNNNGC	7 cut(s)	434, 443, 470, 500, 920, 929, 938
HpyF3I	CTNAG	4 cut(s)	238, 438, 582, 1065
HpySE526I	ACGT	3 cut(s)	48, 58, 650
Hsp92II	CATG	2 cut(s)	202, 819
HspAI	GCGC	1 cut(s)	990
Kpn2I	TCCGGA	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	36, 67, 77, 253
LmnI	GCTCC	2 cut(s)	481, 1013
Lsp1109I	GCAGC	9 cut(s)	319, 415, 421, 443, 460, 473, 490, 512, 916
MaeI	CTAG	4 cut(s)	137, 521, 852, 933
MaeII	ACGT	3 cut(s)	48, 58, 650
MaeIII	GTNAC	2 cut(s)	194, 403
MalI	GATC	4 cut(s)	38, 69, 79, 255
MboI	GATC	4 cut(s)	36, 67, 77, 253
MboII	GAAGA	5 cut(s)	31, 566, 728, 734, 743
MflI	RGATCY	2 cut(s)	36, 67
MhlI	GDGCHC	1 cut(s)	1061
MlsI	TGGCCA	1 cut(s)	494
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	5 cut(s)	149, 255, 532, 593, 836
Mox20I	TGGCCA	1 cut(s)	494
MroI	TCCGGA	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	5 cut(s)	26, 168, 599, 627, 765
MslI	CAYNNNNRTG	1 cut(s)	455
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	3 cut(s)	434, 503, 929
MspI	CCGG	4 cut(s)	525, 609, 899, 1022
MspR9I	CCNGG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	7 cut(s)	434, 443, 470, 500, 920, 929, 938
NciI	CCSGG	1 cut(s)	1022
NdeII	GATC	4 cut(s)	36, 67, 77, 253
NheI	GCTAGC	1 cut(s)	932
NlaIII	CATG	2 cut(s)	202, 819
NlaIV	GGNNCC	6 cut(s)	235, 847, 903, 1015, 1058, 1059
NmeAIII	GCCGAG	1 cut(s)	984
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	819
OliI	CACNNNNGTG	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	819
PfeI	GAWTC	3 cut(s)	160, 557, 680
PflFI	GACNNNGTC	1 cut(s)	541
PleI	GAGTC	5 cut(s)	148, 254, 532, 592, 835
PpsI	GAGTC	5 cut(s)	148, 254, 532, 592, 835
PshBI	ATTAAT	2 cut(s)	168, 765
Psp1406I	AACGTT	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	994
PspN4I	GGNNCC	6 cut(s)	235, 847, 903, 1015, 1058, 1059
PspOMI	GGGCCC	1 cut(s)	1057
PspPI	GGNCC	5 cut(s)	234, 901, 1048, 1057, 1058
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	2 cut(s)	437, 1001
PsuI	RGATCY	2 cut(s)	36, 67
PsyI	GACNNNGTC	1 cut(s)	541
PvuII	CAGCTG	3 cut(s)	434, 503, 929
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	5 cut(s)	26, 168, 599, 627, 765
Sau3AI	GATC	4 cut(s)	36, 67, 77, 253
Sau96I	GGNCC	5 cut(s)	234, 901, 1048, 1057, 1058
SchI	GAGTC	5 cut(s)	149, 255, 532, 593, 836
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	1061
SfcI	CTRYAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	819
SsiI	CCGC	3 cut(s)	949, 1017, 1054
SspMI	CTAG	4 cut(s)	137, 521, 852, 933
StyD4I	CCNGG	1 cut(s)	1020
TaaI	ACNGT	4 cut(s)	403, 454, 616, 966
TaiI	ACGT	3 cut(s)	51, 61, 653
TaqI	TCGA	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	354
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	2 cut(s)	951, 1019
TfiI	GAWTC	3 cut(s)	160, 557, 680
Tru1I	TTAA	5 cut(s)	26, 168, 599, 627, 765
Tru9I	TTAA	5 cut(s)	26, 168, 599, 627, 765
TscAI	CASTG	2 cut(s)	495, 877
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	9 cut(s)	307, 428, 431, 434, 461, 473, 500, 503, 929
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	5 cut(s)	23, 117, 409, 735, 749
TspRI	CASTG	2 cut(s)	495, 877
Tth111I	GACNNNGTC	1 cut(s)	541
VspI	ATTAAT	2 cut(s)	168, 765
XapI	RAATTY	3 cut(s)	273, 564, 642
XceI	RCATGY	1 cut(s)	819
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XspI	CTAG	4 cut(s)	137, 521, 852, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.