Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007280.1

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

41613 .. 42473

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007280.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgggaatgaagggagtgagaaagttaagtcgaaagatcttcaaaaacgttcgcaatcgtgatggagatctctggagatcatacgaggacgcttgcaagaatgaaaaggatttcttaactgaactgggcaagttcctagagtcgtatgagaaaagttcgattcaaattaagaaggtgaaaaacaacgacggaggcaatgatgatggttacatgaggattttggagaaattgaagaatgtcaagggggcctcaggtagagtctatgatcagcattttgcacatcaaagtttgcgcgaaaaggttgaatgtttgatgaggcagcgaggatatttgcatgacgaattgacaggccagaaagaaaagcctcgcaagaagtatgattgtactcgtgcttggaaacgctgtttgaggatggtcactcatatattgttcattggtgctgcagctgctgagtttgcctgcacagttgtggcggcagttttggctgctccacttgttgcactggccattgccgccgctattatcccaacactagccggacagcattggactctgtcttggattgaagattcggaaatttcttcagggtattctgactctgtaattcgcttaatggaatccaaaactatgcgttccattaaggatttgggagaaattcagacgtatctctgtcgtgttgtaaaggacaaagaatcactcacatccgatctcaattctgtaattgacggagatgaagatatcaacatgaacactattgagcgtcttctgaaggacattaatgagttgaaggaaagagcaaggaatagcaagtccaagatattggaggcaagcaaggaggtttctaagaagataaaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

286

Amino Acids

32.58

Weight (kDa)

9.19

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	294
AciI	CCGC	3 cut(s)	473, 513, 516
AclI	AACGTT	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	2 cut(s)	576, 654
AcuI	CTGAAG	2 cut(s)	567, 788
AfaI	GTAC	1 cut(s)	385
AgsI	TTSAA	6 cut(s)	43, 164, 232, 305, 566, 787
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	246, 349, 504
ApeKI	GCWGC	5 cut(s)	319, 440, 443, 446, 485
ApoI	RAATTY	2 cut(s)	576, 654
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	187
AxyI	CCTNAGG	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	506
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	755
BbvI	GCAGC	5 cut(s)	331, 427, 433, 455, 472
BccI	CCATC	3 cut(s)	56, 197, 406
BclI	TGATCA	1 cut(s)	265
BfaI	CTAG	2 cut(s)	137, 533
BfmI	CTRYAG	1 cut(s)	441
BglII	AGATCT	2 cut(s)	36, 67
BisI	GCNGC	8 cut(s)	320, 441, 444, 447, 474, 486, 513, 516
BlsI	GCNGC	8 cut(s)	321, 442, 445, 448, 475, 487, 514, 517
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	755
BpmI	CTGGAG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	129, 507
Bse21I	CCTNAGG	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	202, 507
Bse8I	GATNNNNATC	1 cut(s)	66
BseGI	GGATG	2 cut(s)	417, 701
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	202, 507
BseMII	CTCAG	2 cut(s)	264, 441
BseNI	ACTGG	2 cut(s)	129, 507
BseXI	GCAGC	5 cut(s)	331, 427, 433, 455, 472
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	248, 351, 506
BsiSI	CCGG	1 cut(s)	537
BsnI	GGCC	3 cut(s)	248, 351, 506
Bsp143I	GATC	5 cut(s)	36, 67, 77, 265, 706
BspACI	CCGC	3 cut(s)	473, 513, 516
BspANI	GGCC	3 cut(s)	248, 351, 506
BspCNI	CTCAG	2 cut(s)	263, 442
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	247
BspMAI	CTGCAG	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	202, 507
BsrI	ACTGG	2 cut(s)	129, 507
BssMI	GATC	5 cut(s)	36, 67, 77, 265, 706
BssSI	CACGAG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	94, 460, 829
BstDEI	CTNAG	3 cut(s)	250, 450, 843
BstF5I	GGATG	2 cut(s)	417, 701
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	5 cut(s)	39, 70, 80, 268, 709
BstMBI	GATC	5 cut(s)	36, 67, 77, 265, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 455, 482, 512
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	5 cut(s)	331, 427, 433, 455, 472
BstV2I	GAAGAC	1 cut(s)	755
BstX2I	RGATCY	2 cut(s)	36, 67
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	2 cut(s)	36, 67
Bsu36I	CCTNAGG	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	248, 351, 506
BtsCI	GGATG	2 cut(s)	417, 701
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	94, 460, 829
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	246
CseI	GACGC	2 cut(s)	98, 749
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	3 cut(s)	211, 335, 745
CviJI	RGCY	7 cut(s)	248, 351, 364, 446, 485, 506, 536
CviKI_1	RGCY	7 cut(s)	248, 351, 364, 446, 485, 506, 536
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	3 cut(s)	250, 450, 843
DpnI	GATC	5 cut(s)	38, 69, 79, 267, 708
DpnII	GATC	5 cut(s)	36, 67, 77, 265, 706
EaeI	YGGCCR	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	739
Eco57I	CTGAAG	2 cut(s)	567, 788
Eco81I	CCTNAGG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRV	GATATC	1 cut(s)	739
FaeI	CATG	3 cut(s)	214, 338, 748
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	3 cut(s)	210, 334, 744
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	8 cut(s)	320, 441, 444, 447, 474, 486, 513, 516
FokI	GGATG	2 cut(s)	424, 688
Fsp4HI	GCNGC	8 cut(s)	320, 441, 444, 447, 474, 486, 513, 516
FspBI	CTAG	2 cut(s)	137, 533
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	8 cut(s)	320, 441, 444, 447, 474, 486, 513, 516
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	3 cut(s)	248, 351, 506
HapII	CCGG	1 cut(s)	537
HgaI	GACGC	2 cut(s)	98, 749
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	214, 338, 748
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	8 cut(s)	140, 160, 258, 550, 569, 596, 617, 692
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	5 cut(s)	574, 595, 660, 706, 768
Hpy188III	TCNNGA	2 cut(s)	59, 73
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	4 cut(s)	4, 166, 763, 781
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	2 cut(s)	48, 662
HpyCH4V	TGCA	6 cut(s)	96, 278, 334, 443, 462, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 455, 482, 512
HpyF3I	CTNAG	3 cut(s)	250, 450, 843
HpySE526I	ACGT	2 cut(s)	48, 662
Hsp92II	CATG	3 cut(s)	214, 338, 748
HspAI	GCGC	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	5 cut(s)	36, 67, 77, 265, 706
LmnI	GCTCC	1 cut(s)	493
LpnPI	CCDG	9 cut(s)	58, 110, 237, 333, 365, 472, 488, 550, 570
Lsp1109I	GCAGC	5 cut(s)	331, 427, 433, 455, 472
MaeI	CTAG	2 cut(s)	137, 533
MaeII	ACGT	2 cut(s)	48, 662
MaeIII	GTNAC	2 cut(s)	206, 415
MalI	GATC	5 cut(s)	38, 69, 79, 267, 708
MboI	GATC	5 cut(s)	36, 67, 77, 265, 706
MboII	GAAGA	7 cut(s)	31, 244, 573, 578, 746, 755, 859
MflI	RGATCY	2 cut(s)	36, 67
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	8 cut(s)	165, 227, 341, 576, 603, 654, 712, 720
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	4 cut(s)	149, 267, 544, 590
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	6 cut(s)	26, 116, 168, 611, 639, 777
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	446, 455, 482, 512
NdeII	GATC	5 cut(s)	36, 67, 77, 265, 706
NlaIII	CATG	3 cut(s)	214, 338, 748
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	160, 569, 617, 692
PflFI	GACNNNGTC	1 cut(s)	553
PkrI	GCNGC	8 cut(s)	321, 442, 445, 448, 475, 487, 514, 517
PleI	GAGTC	4 cut(s)	148, 266, 544, 590
PpsI	GAGTC	4 cut(s)	148, 266, 544, 590
PshBI	ATTAAT	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	246
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	36, 67
PsyI	GACNNNGTC	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	6 cut(s)	26, 116, 168, 611, 639, 777
SatI	GCNGC	8 cut(s)	320, 441, 444, 447, 474, 486, 513, 516
Sau3AI	GATC	5 cut(s)	36, 67, 77, 265, 706
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	4 cut(s)	149, 267, 544, 590
SetI	ASST	7 cut(s)	51, 177, 256, 303, 448, 665, 840
SfcI	CTRYAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	8 cut(s)	165, 227, 341, 576, 603, 654, 712, 720
SsiI	CCGC	3 cut(s)	473, 513, 516
SspMI	CTAG	2 cut(s)	137, 533
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	2 cut(s)	51, 665
TaqI	TCGA	2 cut(s)	31, 158
TasI	AATT	8 cut(s)	165, 227, 341, 576, 603, 654, 712, 720
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	3 cut(s)	476, 515, 518
TfiI	GAWTC	4 cut(s)	160, 569, 617, 692
Tru1I	TTAA	6 cut(s)	26, 116, 168, 611, 639, 777
Tru9I	TTAA	6 cut(s)	26, 116, 168, 611, 639, 777
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	5 cut(s)	319, 440, 443, 446, 485
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	23, 117, 421, 747, 761
TspGWI	ACGGA	2 cut(s)	204, 741
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	1 cut(s)	553
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	2 cut(s)	576, 654
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XspI	CTAG	2 cut(s)	137, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.