Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000177

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Reverse (-)

134446 .. 138856

Gene Structure 4411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_177G00434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTTGTTGACGCAGCGACGAGATTTGCAAAAGAATTGAATGACCGAATACAAAAGCCTCGCAAGAAGTATGATTGTACTCGTGCTTGGAGACGCTGTTTGAGGACGGTCACTCATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAGTTGTGGCCGCAGTTATGGCTGCTCCACTTGTTGCACTGGCCATTGCAGCTGCTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAAGATTCTGAAATTCCTTTAGAGTATTCTGACTCTGTAATTCGCTTAGTGCAATCCGGAACTGTGCTTTCCATTAAGGATTTGGGAGAAATTCGGACGTATCTCGGTAGAGTTGTAAAGGACATAGAATCACTCTTATCCCATCTCAATTCTGTAATTGAGGAAGATGAAGATATCAATATGAAAATTATTGAGCGTCTTCTAAAGGACATTAATGAGTTGAAGGAAAGAGCAAGGAATAGCAAGTCCAAGATATTGAAGGCATGCGATGAGGTTTCTGAGAAGATAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

6.84

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	13 - 178	9.8e-14	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	165, 198
AcsI	RAATTY	2 cut(s)	270, 348
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	40, 260, 481, 517
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	140, 209
AluI	AGCT	2 cut(s)	140, 209
Alw26I	GTCTC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	2 cut(s)	165, 198
ApeKI	GCWGC	7 cut(s)	14, 134, 137, 140, 179, 206, 209
ApoI	RAATTY	2 cut(s)	270, 348
AseI	ATTAAT	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	200
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	7 cut(s)	26, 121, 127, 149, 166, 196, 218
BccI	CCATC	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	8 cut(s)	15, 135, 138, 141, 168, 180, 207, 210
BlsI	GCNGC	8 cut(s)	16, 136, 139, 142, 169, 181, 208, 211
BpiI	GAAGAC	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	135, 528
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	7 cut(s)	26, 121, 127, 149, 166, 196, 218
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	167, 200
BsiSI	CCGG	2 cut(s)	231, 315
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	167, 200
Bsp13I	TCCGGA	1 cut(s)	314
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	167, 200
BspCNI	CTCAG	2 cut(s)	136, 529
BspEI	TCCGGA	1 cut(s)	314
BspMAI	CTGCAG	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	109, 160, 322
BstC8I	GCNNGC	2 cut(s)	154, 523
BstDEI	CTNAG	3 cut(s)	144, 304, 537
BstMAI	GTCTC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 149, 176, 206
BstNSI	RCATGY	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	7 cut(s)	26, 121, 127, 149, 166, 196, 218
BstV2I	GAAGAC	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	167, 200
BtgZI	GCGATG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	154, 523
CaiI	CAGNNNCTG	1 cut(s)	143
CseI	GACGC	3 cut(s)	20, 102, 443
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	522
CviJI	RGCY	7 cut(s)	58, 140, 167, 179, 200, 209, 230
CviKI_1	RGCY	7 cut(s)	58, 140, 167, 179, 200, 209, 230
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	144, 304, 537
EaeI	YGGCCR	2 cut(s)	165, 198
Eco32I	GATATC	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	525
FaiI	YATR	7 cut(s)	72, 117, 119, 176, 383, 440, 523
FatI	CATG	1 cut(s)	521
Fnu4HI	GCNGC	8 cut(s)	15, 135, 138, 141, 168, 180, 207, 210
Fsp4HI	GCNGC	8 cut(s)	15, 135, 138, 141, 168, 180, 207, 210
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	8 cut(s)	15, 135, 138, 141, 168, 180, 207, 210
HaeIII	GGCC	2 cut(s)	167, 200
HapII	CCGG	2 cut(s)	231, 315
HgaI	GACGC	3 cut(s)	20, 102, 443
Hin1II	CATG	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	4 cut(s)	244, 263, 290, 386
HpaII	CCGG	2 cut(s)	231, 315
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	4 cut(s)	268, 289, 354, 538
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	475, 511
HpyCH4III	ACNGT	3 cut(s)	109, 160, 322
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	6 cut(s)	29, 137, 156, 194, 206, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 149, 176, 206
HpyF3I	CTNAG	3 cut(s)	144, 304, 537
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	525
Kpn2I	TCCGGA	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	166, 182, 244, 328
Lsp1109I	GCAGC	7 cut(s)	26, 121, 127, 149, 166, 196, 218
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	5 cut(s)	272, 434, 440, 449, 553
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	7 cut(s)	35, 270, 297, 348, 406, 414, 444
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	238, 284
MnlI	CCTC	4 cut(s)	69, 96, 412, 523
Mox20I	TGGCCA	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	2 cut(s)	333, 471
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	140, 209
MspI	CCGG	2 cut(s)	231, 315
MwoI	GCNNNNNNNGC	4 cut(s)	140, 149, 176, 206
NlaIII	CATG	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	525
OliI	CACNNNNGTG	1 cut(s)	161
PaeI	GCATGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	263, 386
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	8 cut(s)	16, 136, 139, 142, 169, 181, 208, 211
PleI	GAGTC	2 cut(s)	238, 284
PpsI	GAGTC	2 cut(s)	238, 284
PshBI	ATTAAT	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	247
PvuII	CAGCTG	2 cut(s)	140, 209
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	333, 471
SatI	GCNGC	8 cut(s)	15, 135, 138, 141, 168, 180, 207, 210
SchI	GAGTC	2 cut(s)	238, 284
SetI	ASST	4 cut(s)	142, 211, 359, 534
SfcI	CTRYAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	525
Sse9I	AATT	7 cut(s)	35, 270, 297, 348, 406, 414, 444
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	3 cut(s)	109, 160, 322
TaiI	ACGT	1 cut(s)	359
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	7 cut(s)	35, 270, 297, 348, 406, 414, 444
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	263, 386
Tru1I	TTAA	2 cut(s)	333, 471
Tru9I	TTAA	2 cut(s)	333, 471
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	7 cut(s)	14, 134, 137, 140, 179, 206, 209
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	115, 441, 455
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	471
XapI	RAATTY	2 cut(s)	270, 348
XceI	RCATGY	1 cut(s)	525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.