Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

17557020 .. 17558760

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23565

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGGTTTTGGAGAAATTGAAGAATGTCAAGGGGGCCTCAGGTAGAGTCCATGATCAGCATTTTGCAGAACAAATGTTGCTCGAAAATGTTAAATGTTTGATGAAGCGGCGAGAAGATTTGCATGAAGAATTGATTAGCCAAAAAGGAAAGCCTCGCAAGAAGTATGATTGTACTCGTGCTTGGAGACGCTGTTTGAGGATGGTCACTAATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAATTGTGGCAGCAGTTATGGCTGCTCCACTTGTTGCACTGGCCATTGCTGCTACTATTATCCCTGTAAGAAACAATTATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

9.83

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	4 - 107	1.4e-07	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	294
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	22
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	36, 294
ApeKI	GCWGC	6 cut(s)	230, 233, 236, 263, 275, 302
AspS9I	GGNCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	296
BauI	CACGAG	1 cut(s)	177
BbvI	GCAGC	6 cut(s)	217, 223, 245, 262, 275, 289
BccI	CCATC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	7 cut(s)	110, 231, 234, 237, 264, 276, 303
BlsI	GCNGC	7 cut(s)	111, 232, 235, 238, 265, 277, 304
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse1I	ACTGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	54, 231
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	6 cut(s)	217, 223, 245, 262, 275, 289
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	38, 296
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	38, 296
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	38, 296
BspCNI	CTCAG	2 cut(s)	53, 232
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	55
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	40, 240
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	6 cut(s)	217, 223, 245, 262, 275, 289
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	38, 296
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	53, 125
CviJI	RGCY	6 cut(s)	38, 141, 154, 236, 275, 296
CviKI_1	RGCY	6 cut(s)	38, 141, 154, 236, 275, 296
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	40, 240
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	56, 128
FaiI	YATR	5 cut(s)	54, 126, 168, 215, 272
FatI	CATG	2 cut(s)	52, 124
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	7 cut(s)	110, 231, 234, 237, 264, 276, 303
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	7 cut(s)	110, 231, 234, 237, 264, 276, 303
GluI	GCNGC	7 cut(s)	110, 231, 234, 237, 264, 276, 303
HaeIII	GGCC	2 cut(s)	38, 296
HgaI	GACGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	56, 128
HinfI	GANTC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	338
HpyCH4V	TGCA	5 cut(s)	68, 124, 233, 252, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
HpyF3I	CTNAG	2 cut(s)	40, 240
Hsp92II	CATG	2 cut(s)	56, 128
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	27, 262, 278, 330
Lsp1109I	GCAGC	6 cut(s)	217, 223, 245, 262, 275, 289
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	34, 128, 140
MfeI	CAATTG	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	4 cut(s)	17, 131, 255, 328
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	49, 165, 192
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	56, 128
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	257
PkrI	GCNGC	7 cut(s)	111, 232, 235, 238, 265, 277, 304
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	7 cut(s)	110, 231, 234, 237, 264, 276, 303
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	57
SetI	ASST	2 cut(s)	46, 238
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	4 cut(s)	17, 131, 255, 328
SsiI	CCGC	1 cut(s)	109
TaqI	TCGA	1 cut(s)	84
TasI	AATT	4 cut(s)	17, 131, 255, 328
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	6 cut(s)	230, 233, 236, 263, 275, 302
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	119, 141, 211
TspRI	CASTG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.