Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

17871569 .. 17872219

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGGATTTTGGAGAAATTGAAGAATGTCAAGGGGGCCTCAGGTAGAGTCTATGATCAGCATTTTGCACATCAAAGTTTGCGCGAAAAGGTTGAATGTTTGATGAGGCAGAGAGGATATTTGCATGACGAATTGACAGGCCAGAAAGAAAAGCCTCGCAAGAAGTATGATTGTACTCGTGCTTGGAGACGCTGTTTGAGGATGGTCGCTCATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAGTTGTGGCGGCAGTTTTGGCTGCTCCACTTGTTGCACTGGCCATTGCCGCCGCTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAAGATTCGGAAATTTCTTCAGGGTATTCTGACTCTGTAATTCGCTTAATGGAATCCAAAACTATGCGTTCCATTAAGGATTTGGGAGAAATTCAGACGTATCTCTGTCGTGTTGTAAAGGACAAAGAATCACTCACATCCGATCTCAATTCTGTAATTGAGGGAGATGAAGATATCAACATGAACACTATTGAGCGTCTTCTGAAGGACATTAATGAGTTGAAGGAAAGAGCAAGCAATAGCAAGTCCAAGATATTGGAGGCAAGCAAGGAGGTTTCTAAGAAGATAAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

216

Amino Acids

24.38

Weight (kDa)

8.89

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	19 - 214	2.6e-11	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	3 cut(s)	263, 303, 306
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	366, 444
AcuI	CTGAAG	2 cut(s)	357, 578
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	22, 95, 356, 577
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	36, 139, 294
ApeKI	GCWGC	4 cut(s)	230, 233, 236, 275
ApoI	RAATTY	2 cut(s)	366, 444
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	296
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	217, 223, 245, 262
BccI	CCATC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	7 cut(s)	231, 234, 237, 264, 276, 303, 306
BlsI	GCNGC	7 cut(s)	232, 235, 238, 265, 277, 304, 307
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse1I	ACTGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	207, 491
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	54, 231
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	217, 223, 245, 262
BsgI	GTGCAG	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	38, 141, 296
BsiSI	CCGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	181
BsmBI	CGTCTC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	38, 141, 296
Bsp143I	GATC	2 cut(s)	55, 496
BspACI	CCGC	3 cut(s)	263, 303, 306
BspANI	GGCC	3 cut(s)	38, 141, 296
BspCNI	CTCAG	2 cut(s)	53, 232
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	55, 496
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	250, 589, 619
BstDEI	CTNAG	3 cut(s)	40, 240, 633
BstF5I	GGATG	2 cut(s)	207, 491
BstFNI	CGCG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	58, 499
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	55, 496
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	217, 223, 245, 262
BstV2I	GAAGAC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	38, 141, 296
BtsCI	GGATG	2 cut(s)	207, 491
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	3 cut(s)	250, 589, 619
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	2 cut(s)	198, 539
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	125, 535
CviJI	RGCY	7 cut(s)	38, 141, 154, 236, 275, 296, 326
CviKI_1	RGCY	7 cut(s)	38, 141, 154, 236, 275, 296, 326
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	3 cut(s)	40, 240, 633
DpnI	GATC	2 cut(s)	57, 498
DpnII	GATC	2 cut(s)	55, 496
EaeI	YGGCCR	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	529
Eco57I	CTGAAG	2 cut(s)	357, 578
Eco81I	CCTNAGG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	128, 538
FaiI	YATR	7 cut(s)	54, 126, 168, 213, 215, 419, 536
FatI	CATG	2 cut(s)	124, 534
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	7 cut(s)	231, 234, 237, 264, 276, 303, 306
FokI	GGATG	2 cut(s)	214, 478
Fsp4HI	GCNGC	7 cut(s)	231, 234, 237, 264, 276, 303, 306
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	7 cut(s)	231, 234, 237, 264, 276, 303, 306
HaeIII	GGCC	3 cut(s)	38, 141, 296
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	2 cut(s)	198, 539
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	128, 538
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	6 cut(s)	48, 340, 359, 386, 407, 482
HpaII	CCGG	1 cut(s)	327
Hpy188I	TCNGA	5 cut(s)	364, 385, 450, 496, 558
HpyAV	CCTTC	2 cut(s)	553, 571
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	5 cut(s)	68, 124, 233, 252, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
HpyF3I	CTNAG	3 cut(s)	40, 240, 633
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	2 cut(s)	128, 538
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	55, 496
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	27, 123, 155, 262, 278, 340, 360
Lsp1109I	GCAGC	4 cut(s)	217, 223, 245, 262
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	452
MalI	GATC	2 cut(s)	57, 498
MboI	GATC	2 cut(s)	55, 496
MboII	GAAGA	6 cut(s)	34, 363, 368, 536, 545, 649
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	7 cut(s)	17, 131, 366, 393, 444, 502, 510
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	3 cut(s)	57, 334, 380
MnlI	CCTC	8 cut(s)	49, 99, 107, 165, 192, 508, 607, 619
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	3 cut(s)	401, 429, 567
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	236, 245, 272, 302
NdeII	GATC	2 cut(s)	55, 496
NlaIII	CATG	2 cut(s)	128, 538
NlaIV	GGNNCC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	359, 407, 482
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	7 cut(s)	232, 235, 238, 265, 277, 304, 307
PleI	GAGTC	3 cut(s)	56, 334, 380
PpsI	GAGTC	3 cut(s)	56, 334, 380
PshBI	ATTAAT	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	401, 429, 567
SatI	GCNGC	7 cut(s)	231, 234, 237, 264, 276, 303, 306
Sau3AI	GATC	2 cut(s)	55, 496
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	3 cut(s)	57, 334, 380
SetI	ASST	5 cut(s)	46, 93, 238, 455, 630
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	7 cut(s)	17, 131, 366, 393, 444, 502, 510
SsiI	CCGC	3 cut(s)	263, 303, 306
SspMI	CTAG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	455
TasI	AATT	7 cut(s)	17, 131, 366, 393, 444, 502, 510
TatI	WGTACW	1 cut(s)	173
TauI	GCSGC	3 cut(s)	266, 305, 308
TfiI	GAWTC	3 cut(s)	359, 407, 482
Tru1I	TTAA	3 cut(s)	401, 429, 567
Tru9I	TTAA	3 cut(s)	401, 429, 567
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	4 cut(s)	230, 233, 236, 275
TspDTI	ATGAA	3 cut(s)	211, 537, 551
TspRI	CASTG	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	2 cut(s)	366, 444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.