Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004217

Physical Location & Seq

Genomic Coordinates Forward (+)

6990133 .. 6992300

Gene Structure 2168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08090.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAATGAAGGGAGTGAGAAACTTAAGTCGAAAGATCTTTACAAAGGTTTGCAAACGTGATGGAGATCTCTGGAGATCATACGAGGACGCTTACAAGAACGATAAAGATTTCCTAACTGAACTGGGCAAGTTCCTAGAGTCATATGAGAAATGTCTGATTCAAATTAAGGGCGGAGGAATTGATGATGGTTACAAGAGAATTTTGGAGAAATTGAAGCTTGTCAAGGGGGCCTCAGATAGAGTCCAGAATCAGTGTTTTGCAGATCAAATGTTGCTCGAAAAGATTGAATGTTTGATAGCACAGCGAAAAGATTTTGGTAGAGAATTGACTGACCAAATAGGAAAGCCTCCCAAGAAATATGATTGTACTCGTGCTTGGAAACGCTGTTTGAGGCTGGTCACTCATATAATATTCATTGGTGCTGCAGCTGCTGAGTTTGCTTGCACAGTTGTGGCGGCTGTTATGTCTGCTCCACTTGTTGCACTTGCCATTGCTGCTGCTATTATCCCAACACTAGCCGGTCACCATTGGACTCTGTCTTGGATTGAAGATTATGAAACTCCTCTCGACTATCAGGATGATGTTATTCGCTTAATGCAATTCGGAATTATGCTTTCCTTTAAGGAGTTGGGAGACATTCAGACGTATCTCAGTAGTGTTGACATAGAATCACTCTTATCCCATCTCAACTGTGTAATTGAGGGTGACGTAATTCTCAATATTGAAAGTATCGAGTGTCTTCTGAAGAAAATTGATGAATTGAGGGAAAGAGCAAGGAATTCCAAGTCCCAGATATCAGAGGCAAAAGATGAGGTTTCAACAACTCTACGAGCATCAAGGTCACCAAGAGCAAGAGTAAGAGTAAGATTCAATTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

295

Amino Acids

33.4

Weight (kDa)

8.48

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	59 - 270	3.1e-12	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004217)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g08090 FvH4_2g08090 FvH4_2g08090 FvH4_2g08090
rosa_chinensis	RchiOBHm_Chr0c38g0503051 RchiOBHm_Chr0c38g0503081 RchiOBHm_Chr6g0262581 RchiOBHm_Chr6g0262601 RchiOBHm_Chr6g0262771
rosa_laevigata	RLG00000014395 RLG00000014397 RLG00000014408 RLG00000014415
rosa_multiflora	Rmu_co8171452.1_g000001 Rmu_sc0000596.1_g000027 Rmu_sc0000596.1_g000035 Rmu_sc0003237.1_g000021 Rmu_sc0007280.1_g000010
rosa_roxburghii	Rroxscaffold_177G00434200 Rroxscaffold_177G00434280 Rroxscaffold_177G00434370 Rroxscaffold_7G00204990 Rroxscaffold_7G00205140
rosa_rugosa	Rorug06G0000400 Rorug06G0000500 Rorug06G0001500
rosa_samantha	Rh6AG119700 Rh6AG119900 Rh6BG114000 Rh6CG112300 Rh6DG101900
rosa_wichuraiana	Rw6G010340 Rw6G010730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 458
AcsI	RAATTY	2 cut(s)	201, 781
AcuI	CTGAAG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	370
AflII	CTTAAG	1 cut(s)	25
AgsI	TTSAA	7 cut(s)	164, 217, 290, 551, 728, 822, 874
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	220, 431
AluI	AGCT	2 cut(s)	220, 431
Alw26I	GTCTC	1 cut(s)	630
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	5 cut(s)	425, 428, 431, 497, 500
ApoI	RAATTY	2 cut(s)	201, 781
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	518, 719, 837
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	734
BbvI	GCAGC	5 cut(s)	412, 418, 440, 484, 487
BccI	CCATC	3 cut(s)	56, 182, 693
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	2 cut(s)	137, 518
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	25
BglII	AGATCT	2 cut(s)	36, 67
BisI	GCNGC	6 cut(s)	426, 429, 432, 459, 498, 501
BlsI	GCNGC	6 cut(s)	427, 430, 433, 460, 499, 502
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	734
BpmI	CTGGAG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	2 cut(s)	12, 492
Bse8I	GATNNNNATC	1 cut(s)	66
BseGI	GGATG	1 cut(s)	586
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	12, 492
BseMII	CTCAG	3 cut(s)	249, 426, 667
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	5 cut(s)	412, 418, 440, 484, 487
BshFI	GGCC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	36, 67, 77, 265
BspACI	CCGC	2 cut(s)	174, 458
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	3 cut(s)	248, 427, 666
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	12, 492
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	521
BssMI	GATC	4 cut(s)	36, 67, 77, 265
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	451, 695
BstAFI	CTTAAG	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	235, 435, 653
BstEII	GGTNACC	2 cut(s)	524, 843
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	4 cut(s)	39, 70, 80, 268
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	4 cut(s)	36, 67, 77, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 440, 497
BstPI	GGTNACC	2 cut(s)	524, 843
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	5 cut(s)	412, 418, 440, 484, 487
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	2 cut(s)	36, 67
BstYI	RGATCY	2 cut(s)	36, 67
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	369
CviJI	RGCY	7 cut(s)	220, 233, 349, 397, 431, 461, 521
CviKI_1	RGCY	7 cut(s)	220, 233, 349, 397, 431, 461, 521
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	3 cut(s)	235, 435, 653
DpnI	GATC	4 cut(s)	38, 69, 79, 267
DpnII	GATC	4 cut(s)	36, 67, 77, 265
EciI	GGCGGA	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	767
Eco91I	GGTNACC	2 cut(s)	524, 843
EcoO109I	RGGNCCY	1 cut(s)	231
EcoO65I	GGTNACC	2 cut(s)	524, 843
EcoRI	GAATTC	1 cut(s)	781
EcoRV	GATATC	1 cut(s)	798
FaqI	GGGAC	1 cut(s)	775
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	6 cut(s)	426, 429, 432, 459, 498, 501
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	6 cut(s)	426, 429, 432, 459, 498, 501
FspBI	CTAG	2 cut(s)	137, 518
GluI	GCNGC	6 cut(s)	426, 429, 432, 459, 498, 501
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	7 cut(s)	140, 160, 243, 250, 535, 671, 870
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	3 cut(s)	518, 719, 837
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	6 cut(s)	159, 238, 608, 645, 747, 802
Hpy188III	TCNNGA	4 cut(s)	73, 247, 569, 578
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	2 cut(s)	451, 695
HpyCH4IV	ACGT	3 cut(s)	58, 647, 711
HpyCH4V	TGCA	6 cut(s)	54, 263, 428, 447, 485, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 440, 497
HpyF3I	CTNAG	3 cut(s)	235, 435, 653
HpySE526I	ACGT	3 cut(s)	58, 647, 711
Kzo9I	GATC	4 cut(s)	36, 67, 77, 265
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	7 cut(s)	58, 110, 260, 383, 535, 563, 806
Lsp1109I	GCAGC	5 cut(s)	412, 418, 440, 484, 487
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	2 cut(s)	137, 518
MaeII	ACGT	3 cut(s)	58, 647, 711
MaeIII	GTNAC	5 cut(s)	191, 400, 524, 707, 843
MalI	GATC	4 cut(s)	38, 69, 79, 267
MboI	GATC	4 cut(s)	36, 67, 77, 265
MboII	GAAGA	3 cut(s)	563, 734, 760
MflI	RGATCY	2 cut(s)	36, 67
MlyI	GAGTC	3 cut(s)	149, 252, 529
MseI	TTAA	4 cut(s)	26, 168, 596, 624
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	25
MspI	CCGG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	431, 440, 497
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	4 cut(s)	36, 67, 77, 265
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	4 cut(s)	400, 524, 707, 843
OliI	CACNNNNGTG	1 cut(s)	452
PfeI	GAWTC	4 cut(s)	160, 250, 671, 870
PflFI	GACNNNGTC	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	427, 430, 433, 460, 499, 502
PleI	GAGTC	3 cut(s)	148, 251, 529
PpsI	GAGTC	3 cut(s)	148, 251, 529
PspEI	GGTNACC	2 cut(s)	524, 843
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	36, 67
PsyI	GACNNNGTC	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	26, 168, 596, 624
SatI	GCNGC	6 cut(s)	426, 429, 432, 459, 498, 501
Sau3AI	GATC	4 cut(s)	36, 67, 77, 265
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	3 cut(s)	149, 252, 529
SetI	ASST	8 cut(s)	51, 61, 222, 433, 650, 714, 819, 845
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SsiI	CCGC	2 cut(s)	174, 458
SspI	AATATT	2 cut(s)	414, 724
SspMI	CTAG	2 cut(s)	137, 518
TaaI	ACNGT	2 cut(s)	451, 695
TaiI	ACGT	3 cut(s)	61, 650, 714
TaqI	TCGA	4 cut(s)	31, 279, 570, 735
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	4 cut(s)	160, 250, 671, 870
Tru1I	TTAA	4 cut(s)	26, 168, 596, 624
Tru9I	TTAA	4 cut(s)	26, 168, 596, 624
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	4 cut(s)	400, 524, 707, 843
TseI	GCWGC	5 cut(s)	425, 428, 431, 497, 500
Tsp45I	GTSAC	4 cut(s)	400, 524, 707, 843
TspDTI	ATGAA	4 cut(s)	23, 406, 573, 774
TspRI	CASTG	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	201, 781
XspI	CTAG	2 cut(s)	137, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.