Rmu_sc0000654.1_g000044

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000654.1
OG0012678
Physical Location & Seq
Reverse (-)
211155 .. 214547
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
atgaagaggcggaaaaagaggatcattctcaactggttgcccttcctcctcatgggtcttgaccagtattgtagggcagcttctctaaacaacaaatccttcatgctcggcaagaagttcgtcaaagcttgcattcccgggagtccaccgatcataaatagaaatggagcgactgggaactatcctggttgcactaacgtttcttatcagcgagcagtagatgatggcgctgatataatagattgctcggtccaaatgtcaagtgatggagttgccttctgcttagattccatagacctcaactcaggcaccaatgcattgactcaattcatgaccaagagtgagactatccctgaacttcaacctgaagctggagtcttctcgttccagctcacatgggaggagattcagtccttaaaaacccaactgcaaagtccctatggaaccaaggaaaacgtgtatagaaacccagctaacaaggatgcaggcaaactggtgacccttaatgaattcctagagtttgccaaggaaaaggcaactactggaattttgatcgacattcagaatgcgctgtacctagcatcaagggcgggtctggacattgttggtaccgtaacctctgccttgaaaaatgccacactcgacaagcaatcgactcaaaaggtcatgatcaaatcagatggcacttcagtcttgtctaaattcgctgatgagaaagcatacacaagggtgtacaacattaagggggaaataggtgctacaccaaagcaatcaattgaagagatcaagaagtttgcagatgcagtaactgtctccagaaattcggttattcagtccaccagttccttcatctcgggagaaactcacgtcatcaaggaattgcaggctgcaaatctttcagtgtacatcaattacctgaaaaacgaattcatcagtctcatgtttgattatctcttggaccgcattaccgaaatagctacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

328

Amino Acids

36.24

Weight (kDa)

8.63

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 56 - 303 1e-18 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 608
AccB1I GGYRCC 2 cut(s) 308, 608
AciI CCGC 3 cut(s) 10, 590, 961
AclI AACGTT 1 cut(s) 198
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 5 cut(s) 509, 546, 701, 820, 926
AcuI CTGAAG 2 cut(s) 387, 672
AfaI GTAC 4 cut(s) 575, 610, 734, 905
AfiI CCNNNNNNNGG 2 cut(s) 52, 371
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 3 cut(s) 362, 628, 779
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 1 cut(s) 184
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 6 cut(s) 80, 128, 371, 391, 473, 977
AluI AGCT 6 cut(s) 80, 128, 371, 391, 473, 977
Alw26I GTCTC 3 cut(s) 338, 817, 941
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 2 cut(s) 137, 853
ApeKI GCWGC 2 cut(s) 77, 887
ApoI RAATTY 5 cut(s) 509, 546, 701, 820, 926
Asp718I GGTACC 1 cut(s) 608
AspLEI GCGC 2 cut(s) 230, 571
AspS9I GGNCC 2 cut(s) 250, 958
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 1 cut(s) 508
AvaI CYCGRG 2 cut(s) 137, 853
AvaII GGWCC 2 cut(s) 250, 958
BanI GGYRCC 2 cut(s) 308, 608
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 89, 874
BccI CCATC 3 cut(s) 218, 260, 674
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 2 cut(s) 138, 139
BcoDI GTCTC 3 cut(s) 338, 817, 941
BfaI CTAG 2 cut(s) 515, 578
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 2 cut(s) 78, 888
BlsI GCNGC 2 cut(s) 79, 889
Bme1390I CCNGG 3 cut(s) 138, 139, 186
Bme18I GGWCC 2 cut(s) 250, 958
BmeT110I CYCGRG 2 cut(s) 137, 853
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 2 cut(s) 250, 958
BmiI GGNNCC 3 cut(s) 310, 445, 610
BmrFI CCNGG 3 cut(s) 138, 139, 186
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 3 cut(s) 472, 590, 790
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 370
BpmI CTGGAG 2 cut(s) 393, 799
BpuMI CCSGG 2 cut(s) 138, 139
BsaJI CCNNGG 3 cut(s) 137, 447, 525
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 371
Bse1I ACTGG 6 cut(s) 38, 64, 178, 498, 547, 840
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 137, 447, 525
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 52, 371
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 6 cut(s) 38, 64, 178, 498, 547, 840
BseRI GAGGAG 2 cut(s) 38, 416
BseXI GCAGC 2 cut(s) 89, 874
BseYI CCCAGC 1 cut(s) 469
BshNI GGYRCC 2 cut(s) 308, 608
BsiHKCI CYCGRG 2 cut(s) 137, 853
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 52, 371
BsmAI GTCTC 3 cut(s) 338, 817, 941
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 132, 571
BsoBI CYCGRG 2 cut(s) 137, 853
Bsp1407I TGTACA 2 cut(s) 732, 903
Bsp143I GATC 5 cut(s) 21, 150, 552, 669, 783
BspACI CCGC 3 cut(s) 10, 590, 961
BspCNI CTCAG 1 cut(s) 317
BspHI TCATGA 2 cut(s) 330, 666
BspLI GGNNCC 3 cut(s) 310, 445, 610
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 308, 608
BsrGI TGTACA 2 cut(s) 732, 903
BsrI ACTGG 6 cut(s) 38, 64, 178, 498, 547, 840
BssECI CCNNGG 3 cut(s) 137, 447, 525
BssMI GATC 5 cut(s) 21, 150, 552, 669, 783
BssT1I CCWWGG 2 cut(s) 447, 525
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 613, 811
Bst6I CTCTTC 1 cut(s) 774
BstAUI TGTACA 2 cut(s) 732, 903
BstC8I GCNNGC 4 cut(s) 130, 213, 487, 885
BstDEI CTNAG 2 cut(s) 283, 304
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 571
BstKTI GATC 5 cut(s) 24, 153, 555, 672, 786
BstMAI GTCTC 3 cut(s) 338, 817, 941
BstMBI GATC 5 cut(s) 21, 150, 552, 669, 783
BstMWI GCNNNNNNNGC 1 cut(s) 587
BstNI CCWGG 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 3 cut(s) 136, 137, 184
BstV1I GCAGC 2 cut(s) 89, 874
BstV2I GAAGAC 1 cut(s) 370
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 906
Cac8I GCNNGC 4 cut(s) 130, 213, 487, 885
CaiI CAGNNNCTG 1 cut(s) 809
CciI TCATGA 2 cut(s) 330, 666
CfoI GCGC 2 cut(s) 230, 571
Cfr13I GGNCC 2 cut(s) 250, 958
Cfr9I CCCGGG 1 cut(s) 137
Csp6I GTAC 4 cut(s) 574, 609, 733, 904
CviAII CATG 6 cut(s) 52, 103, 331, 396, 667, 940
CviJI RGCY 7 cut(s) 80, 128, 371, 391, 473, 887, 977
CviKI_1 RGCY 7 cut(s) 80, 128, 371, 391, 473, 887, 977
CviQI GTAC 4 cut(s) 574, 609, 733, 904
DdeI CTNAG 2 cut(s) 283, 304
DpnI GATC 5 cut(s) 23, 152, 554, 671, 785
DpnII GATC 5 cut(s) 21, 150, 552, 669, 783
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 447, 525
Eco47I GGWCC 2 cut(s) 250, 958
Eco57I CTGAAG 2 cut(s) 387, 672
Eco88I CYCGRG 2 cut(s) 137, 853
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRI GAATTC 2 cut(s) 509, 926
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 447, 525
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 2 cut(s) 447, 525
FaeI CATG 6 cut(s) 55, 106, 334, 399, 670, 943
FaqI GGGAC 1 cut(s) 420
FatI CATG 6 cut(s) 51, 102, 330, 395, 666, 939
FauI CCCGC 1 cut(s) 583
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 2 cut(s) 78, 888
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 2 cut(s) 78, 888
FspBI CTAG 2 cut(s) 515, 578
GlaI GCGC 2 cut(s) 229, 570
GluI GCNGC 2 cut(s) 78, 888
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 2 cut(s) 393, 799
HaeII RGCGCY 1 cut(s) 231
HapII CCGG 1 cut(s) 138
HhaI GCGC 2 cut(s) 230, 571
Hin1II CATG 6 cut(s) 55, 106, 334, 399, 670, 943
Hin6I GCGC 2 cut(s) 228, 569
HinP1I GCGC 2 cut(s) 228, 569
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 6 cut(s) 142, 287, 322, 375, 406, 655
HpaII CCGG 1 cut(s) 138
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 4 cut(s) 146, 733, 837, 904
Hpy188I TCNGA 2 cut(s) 564, 679
Hpy188III TCNNGA 7 cut(s) 59, 331, 596, 667, 787, 816, 855
Hpy8I GTNNAC 4 cut(s) 146, 733, 837, 904
HpyAV CCTTC 4 cut(s) 52, 109, 286, 856
HpyCH4III ACNGT 2 cut(s) 613, 811
HpyCH4IV ACGT 3 cut(s) 198, 456, 867
HpyCH4V TGCA 9 cut(s) 132, 192, 317, 430, 485, 797, 803, 883, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 587
HpyF3I CTNAG 2 cut(s) 283, 304
HpySE526I ACGT 3 cut(s) 198, 456, 867
Hsp92II CATG 6 cut(s) 55, 106, 334, 399, 670, 943
HspAI GCGC 2 cut(s) 228, 569
KpnI GGTACC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 5 cut(s) 21, 150, 552, 669, 783
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 89, 874
LweI GCATC 3 cut(s) 472, 590, 790
MaeI CTAG 2 cut(s) 515, 578
MaeII ACGT 3 cut(s) 198, 456, 867
MaeIII GTNAC 3 cut(s) 496, 613, 805
MalI GATC 5 cut(s) 23, 152, 554, 671, 785
MboI GATC 5 cut(s) 21, 150, 552, 669, 783
MboII GAAGA 3 cut(s) 16, 370, 791
MfeI CAATTG 1 cut(s) 774
MluCI AATT 9 cut(s) 326, 509, 546, 701, 774, 820, 878, 910, 926
MlyI GAGTC 4 cut(s) 151, 316, 384, 649
MnlI CCTC 6 cut(s) 12, 56, 59, 308, 394, 628
Mph1103I ATGCAT 1 cut(s) 319
MseI TTAA 3 cut(s) 416, 504, 741
MslI CAYNNNNRTG 1 cut(s) 728
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 3 cut(s) 138, 139, 186
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 2 cut(s) 132, 571
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 587
NciI CCSGG 2 cut(s) 138, 139
NdeII GATC 5 cut(s) 21, 150, 552, 669, 783
NlaIII CATG 6 cut(s) 55, 106, 334, 399, 670, 943
NlaIV GGNNCC 3 cut(s) 310, 445, 610
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 496
NsiI ATGCAT 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 728
PagI TCATGA 2 cut(s) 330, 666
PctI GAATGC 2 cut(s) 132, 571
PfeI GAWTC 2 cut(s) 287, 406
PkrI GCNGC 2 cut(s) 79, 889
PleI GAGTC 4 cut(s) 150, 316, 383, 649
PpsI GAGTC 4 cut(s) 150, 316, 383, 649
Psp1406I AACGTT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 310, 445, 610
PspPI GGNCC 2 cut(s) 250, 958
PstNI CAGNNNCTG 1 cut(s) 809
RsaI GTAC 4 cut(s) 575, 610, 734, 905
RsaNI GTAC 4 cut(s) 574, 609, 733, 904
RseI CAYNNNNRTG 1 cut(s) 728
SaqAI TTAA 3 cut(s) 416, 504, 741
SatI GCNGC 2 cut(s) 78, 888
Sau3AI GATC 5 cut(s) 21, 150, 552, 669, 783
Sau96I GGNCC 2 cut(s) 250, 958
SchI GAGTC 4 cut(s) 151, 316, 384, 649
ScrFI CCNGG 3 cut(s) 138, 139, 186
SfaNI GCATC 3 cut(s) 472, 590, 790
SinI GGWCC 2 cut(s) 250, 958
SmaI CCCGGG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 728
Sse9I AATT 9 cut(s) 326, 509, 546, 701, 774, 820, 878, 910, 926
SsiI CCGC 3 cut(s) 10, 590, 961
SspMI CTAG 2 cut(s) 515, 578
StyD4I CCNGG 3 cut(s) 136, 137, 184
StyI CCWWGG 2 cut(s) 447, 525
TaaI ACNGT 2 cut(s) 613, 811
TaiI ACGT 3 cut(s) 201, 459, 870
TaqI TCGA 3 cut(s) 555, 642, 653
TaqII GACCGA 1 cut(s) 238
TasI AATT 9 cut(s) 326, 509, 546, 701, 774, 820, 878, 910, 926
TatI WGTACW 2 cut(s) 732, 903
TfiI GAWTC 2 cut(s) 287, 406
Tru1I TTAA 3 cut(s) 416, 504, 741
Tru9I TTAA 3 cut(s) 416, 504, 741
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 2 cut(s) 77, 887
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 6 cut(s) 17, 91, 319, 522, 838, 919
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 1 cut(s) 906
VpaK11BI GGWCC 2 cut(s) 250, 958
XapI RAATTY 5 cut(s) 509, 546, 701, 820, 926
XmaI CCCGGG 1 cut(s) 137
XspI CTAG 2 cut(s) 515, 578
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.