Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000663.1

Orthogroup ID

OG0012703

Physical Location & Seq

Genomic Coordinates Reverse (-)

92054 .. 92632

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcttgactcaacaggctcggattaccatagctgggtaaccgacgttgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccggatcttgtgttcgtacgaacacctacaaagcatgctcaagcagttatattgatgcgacgtcatatggacaaagcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaacctgcgctttactgacttcaagtctgttgctgaatataattcagaagctctttgcttacaatccatgttgagattttgtggacaacctgtcacagagcaagagctaattgagaaaactctcttcaccttccccgtctcagcaattgtggtctcaaaggaatatcgtactgaagtcaatgctggatggatcacgaggtttcatcagcttatcaatatcatatctgtagctgataaacatgataacatactcgtgaggaattataattcaaggcccattggaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

192

Amino Acids

22.13

Weight (kDa)

6.3

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	43 - 143	9.1e-06	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012703)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AatII	GACGTC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	303
AccB1I	GGYRCC	1 cut(s)	91
AclWI	GGATC	2 cut(s)	111, 488
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	117, 460
AfeI	AGCGCT	2 cut(s)	228, 239
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	5 cut(s)	66, 277, 284, 313, 561
AhdI	GACNNNNNGTC	2 cut(s)	313, 380
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	33, 217, 341, 397, 499, 521
AluI	AGCT	6 cut(s)	33, 217, 341, 397, 499, 521
Alw26I	GTCTC	2 cut(s)	433, 448
AlwI	GGATC	2 cut(s)	111, 488
Aor51HI	AGCGCT	2 cut(s)	228, 239
AoxI	GGCC	1 cut(s)	563
AspLEI	GCGC	3 cut(s)	229, 240, 300
AspS9I	GGNCC	1 cut(s)	564
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	91
BauI	CACGAG	2 cut(s)	484, 542
BccI	CCATC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	433, 448
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	2 cut(s)	230, 241
BfuAI	ACCTGC	1 cut(s)	303
Bme1390I	CCNGG	2 cut(s)	89, 101
BmeRI	GACNNNNNGTC	2 cut(s)	313, 380
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	2 cut(s)	89, 101
BmsI	GCATC	2 cut(s)	144, 196
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	211, 482
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	193, 444
BseRI	GAGGAG	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	33
BshFI	GGCC	1 cut(s)	565
BshNI	GGYRCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	101
BsiWI	CGTACG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	433, 448
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	565
Bso31I	GGTCTC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	103, 198, 480
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	2 cut(s)	192, 443
BspLI	GGNNCC	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	2 cut(s)	111, 488
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	3 cut(s)	103, 198, 480
BssNI	GRCGYC	1 cut(s)	160
BssSI	CACGAG	2 cut(s)	484, 542
Bst2BI	CACGAG	2 cut(s)	484, 542
Bst2UI	CCWGG	1 cut(s)	89
Bst6I	CTCTTC	2 cut(s)	228, 419
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	3 cut(s)	179, 430, 576
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	211, 482
BstH2I	RGCGCY	2 cut(s)	230, 241
BstHHI	GCGC	3 cut(s)	229, 240, 300
BstKTI	GATC	3 cut(s)	106, 201, 483
BstMAI	GTCTC	2 cut(s)	433, 448
BstMBI	GATC	3 cut(s)	103, 198, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	87, 99
BstSFI	CTRYAG	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	211, 482
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	3 cut(s)	229, 240, 300
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	116, 459
CviAII	CATG	3 cut(s)	134, 358, 530
CviJI	RGCY	8 cut(s)	18, 33, 217, 341, 397, 499, 521, 565
CviKI_1	RGCY	8 cut(s)	18, 33, 217, 341, 397, 499, 521, 565
CviQI	GTAC	2 cut(s)	116, 459
DdeI	CTNAG	3 cut(s)	179, 430, 576
DpnI	GATC	3 cut(s)	105, 200, 482
DpnII	GATC	3 cut(s)	103, 198, 480
DriI	GACNNNNNGTC	2 cut(s)	313, 380
Eam1104I	CTCTTC	2 cut(s)	228, 419
Eam1105I	GACNNNNNGTC	2 cut(s)	313, 380
EarI	CTCTTC	2 cut(s)	228, 419
Eco31I	GGTCTC	1 cut(s)	448
Eco47III	AGCGCT	2 cut(s)	228, 239
Eco57I	CTGAAG	1 cut(s)	483
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	3 cut(s)	137, 361, 533
FatI	CATG	3 cut(s)	133, 357, 529
FauNDI	CATATG	1 cut(s)	165
FokI	GGATG	2 cut(s)	218, 489
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	3 cut(s)	228, 239, 299
GsaI	CCCAGC	1 cut(s)	37
HaeII	RGCGCY	2 cut(s)	230, 241
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	3 cut(s)	229, 240, 300
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	137, 361, 533
Hin6I	GCGC	3 cut(s)	227, 238, 298
HinP1I	GCGC	3 cut(s)	227, 238, 298
HinfI	GANTC	2 cut(s)	8, 257
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	3 cut(s)	22, 182, 337
Hpy188III	TCNNGA	2 cut(s)	484, 544
Hpy8I	GTNNAC	1 cut(s)	374
Hpy99I	CGWCG	2 cut(s)	47, 162
HpyAV	CCTTC	2 cut(s)	271, 430
HpyCH4IV	ACGT	2 cut(s)	45, 160
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	3 cut(s)	179, 430, 576
HpySE526I	ACGT	2 cut(s)	45, 160
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	137, 361, 533
HspAI	GCGC	3 cut(s)	227, 238, 298
Kzo9I	GATC	3 cut(s)	103, 198, 480
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	19, 74, 101, 114, 282, 308, 393, 459
LweI	GCATC	2 cut(s)	144, 196
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	45, 160
MaeIII	GTNAC	2 cut(s)	37, 382
MalI	GATC	3 cut(s)	105, 200, 482
MboI	GATC	3 cut(s)	103, 198, 480
MboII	GAAGA	2 cut(s)	245, 406
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	5 cut(s)	331, 399, 435, 550, 556
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	5 cut(s)	68, 272, 275, 480, 540
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	89, 101
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	3 cut(s)	103, 198, 480
NlaIII	CATG	3 cut(s)	137, 361, 533
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	257
Pfl23II	CGTACG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	87
PspLI	CGTACG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	2 cut(s)	117, 460
RsaNI	GTAC	2 cut(s)	116, 459
RseI	CAYNNNNRTG	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	103, 198, 480
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	2 cut(s)	89, 101
SfaNI	GCATC	2 cut(s)	144, 196
SfcI	CTRYAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	5 cut(s)	331, 399, 435, 550, 556
SspI	AATATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	87, 99
TaiI	ACGT	2 cut(s)	48, 163
TaqI	TCGA	1 cut(s)	197
TasI	AATT	5 cut(s)	331, 399, 435, 550, 556
TfiI	GAWTC	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	482
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.