Rmu_sc0005023.1_g000006

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005023.1
Physical Location & Seq
Forward (+)
37489 .. 37908
420 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005023.1_g000006.1.cds

Sequence Viewer

Length: 420 bp
atgcgaccccatatggacaaggcacttagattggagtatatgtcgatcaatgatgcaagagagctatgggtagcggtagaagagcactttggcaatgtccaagactccctcctccctgaattgaaggttcaatggaacaatctgcgctttgctgatttcaagtctgttgctgaatataattcagaagctcttcgcctacaatccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccgttgtggtatcaaagcaataccacactgaagtcaatgatggacggattacgaggtttcatcagcttatcaatctcatatctgtagttgagaaacatgataacatactcgtgaggaattataattcaaggcctatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

16.26

Weight (kDa)

6.2

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AciI CCGC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 4 cut(s) 124, 131, 160, 408
AhdI GACNNNNNGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 64, 188, 244, 346
AluI AGCT 4 cut(s) 64, 188, 244, 346
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 147
BauI CACGAG 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 227
BmsI GCATC 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 412
BspQI GCTCTTC 2 cut(s) 75, 195
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 389
Bst6I CTCTTC 2 cut(s) 75, 195
BstDEI CTNAG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 363
BsuRI GGCC 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 306
CfoI GCGC 1 cut(s) 147
CviAII CATG 2 cut(s) 205, 377
CviJI RGCY 6 cut(s) 64, 188, 244, 281, 346, 412
CviKI_1 RGCY 6 cut(s) 64, 188, 244, 281, 346, 412
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 75, 195
Eco147I AGGCCT 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 2 cut(s) 208, 380
FatI CATG 2 cut(s) 204, 376
FauNDI CATATG 1 cut(s) 12
GlaI GCGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 412
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 208, 380
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 391
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 118, 277
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 208, 380
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 2 cut(s) 129, 240
LweI GCATC 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 92, 182
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 5 cut(s) 119, 178, 246, 397, 403
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 5 cut(s) 119, 122, 204, 327, 387
MroXI GAANNNNTTC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 389
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 208, 380
NmuCI GTSAC 1 cut(s) 229
PceI AGGCCT 1 cut(s) 412
PciSI GCTCTTC 2 cut(s) 75, 195
PdmI GAANNNNTTC 1 cut(s) 189
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 389
SapI GCTCTTC 2 cut(s) 75, 195
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 87
SetI ASST 9 cut(s) 66, 129, 190, 215, 229, 246, 269, 338, 348
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 5 cut(s) 119, 178, 246, 397, 403
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 1 cut(s) 74
StuI AGGCCT 1 cut(s) 412
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 119, 178, 246, 397, 403
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.