Rmu_sc0001696.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001696.1
OG0012703
Physical Location & Seq
Forward (+)
108480 .. 111092
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001696.1_g000021.1.cds

Sequence Viewer

Length: 447 bp
atgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctgcgctttgctgacttcaagtctgttgctgaatataattcagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagctattgtggtatcaaagcaataccgtactgaagtcaatgctggacggatcacgaggcacggtggtcttgcaagaggcagaaaatgccattcaagcgcttggaagcacatatctctacggtggccatcgggttctcgagagagcaaaggtgagacccggaagatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

9.94

Isoelectric Point (pI)

60.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 335
AcoI YGGCCR 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 307
AfeI AGCGCT 3 cut(s) 75, 86, 376
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 4 cut(s) 124, 131, 160, 372
AhdI GACNNNNNGTC 2 cut(s) 160, 227
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 64, 188, 244, 281
AluI AGCT 4 cut(s) 64, 188, 244, 281
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 414
Aor51HI AGCGCT 3 cut(s) 75, 86, 376
AoxI GGCC 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 4 cut(s) 76, 87, 147, 377
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 440
AvaI CYCGRG 1 cut(s) 414
BalI TGGCCA 1 cut(s) 403
BauI CACGAG 1 cut(s) 331
BccI CCATC 1 cut(s) 412
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 3 cut(s) 77, 88, 378
Bme1390I CCNGG 1 cut(s) 436
BmeRI GACNNNNNGTC 2 cut(s) 160, 227
BmeT110I CYCGRG 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 436
BsaHI GRCGYC 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 414
BsiSI CCGG 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 403
Bso31I GGTCTC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 414
Bsp143I GATC 2 cut(s) 45, 327
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 39
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 2 cut(s) 75, 195
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 2 cut(s) 45, 327
BssNI GRCGYC 1 cut(s) 7
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst4CI ACNGT 4 cut(s) 201, 305, 341, 399
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstAPI GCANNNNNTGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 3 cut(s) 77, 88, 378
BstHHI GCGC 4 cut(s) 76, 87, 147, 377
BstKTI GATC 2 cut(s) 48, 330
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 2 cut(s) 45, 327
BstMWI GCNNNNNNNGC 3 cut(s) 82, 363, 372
BstSCI CCNGG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 58
CfoI GCGC 4 cut(s) 76, 87, 147, 377
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 64, 188, 244, 281, 403
CviKI_1 RGCY 5 cut(s) 64, 188, 244, 281, 403
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 47, 329
DpnII GATC 2 cut(s) 45, 327
DriI GACNNNNNGTC 2 cut(s) 160, 227
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 2 cut(s) 160, 227
EarI CTCTTC 2 cut(s) 75, 195
Eco31I GGTCTC 1 cut(s) 425
Eco47III AGCGCT 3 cut(s) 75, 86, 376
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 414
FaeI CATG 1 cut(s) 208
FaiI YATR 9 cut(s) 12, 14, 39, 41, 67, 177, 197, 206, 389
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 77
GlaI GCGC 4 cut(s) 75, 86, 146, 376
HaeII RGCGCY 3 cut(s) 77, 88, 378
HaeIII GGCC 1 cut(s) 403
HapII CCGG 1 cut(s) 436
HgaI GACGC 1 cut(s) 15
HhaI GCGC 4 cut(s) 76, 87, 147, 377
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 4 cut(s) 74, 85, 145, 375
HinP1I GCGC 4 cut(s) 74, 85, 145, 375
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 3 cut(s) 331, 414, 416
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 118, 277
HpyCH4III ACNGT 4 cut(s) 201, 305, 341, 399
HpyCH4V TGCA 2 cut(s) 56, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 363, 372
HpyF3I CTNAG 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 4 cut(s) 74, 85, 145, 375
Kzo9I GATC 2 cut(s) 45, 327
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 3 cut(s) 129, 240, 306
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 47, 329
MboI GATC 2 cut(s) 45, 327
MboII GAAGA 2 cut(s) 92, 182
MlsI TGGCCA 1 cut(s) 403
MluCI AATT 2 cut(s) 178, 246
MluNI TGGCCA 1 cut(s) 403
MnlI CCTC 5 cut(s) 119, 122, 204, 327, 347
Mox20I TGGCCA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 1 cut(s) 403
MseI TTAA 1 cut(s) 445
Msp20I TGGCCA 1 cut(s) 403
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 436
MwoI GCNNNNNNNGC 3 cut(s) 82, 363, 372
NciI CCSGG 1 cut(s) 436
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 45, 327
NlaIII CATG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 414
PciSI GCTCTTC 2 cut(s) 75, 195
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 104
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SapI GCTCTTC 2 cut(s) 75, 195
SaqAI TTAA 1 cut(s) 445
Sau3AI GATC 2 cut(s) 45, 327
ScrFI CCNGG 1 cut(s) 436
SetI ASST 9 cut(s) 66, 129, 190, 215, 229, 246, 269, 283, 430
SfaNI GCATC 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 2 cut(s) 178, 246
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 4 cut(s) 201, 305, 341, 399
TaqI TCGA 2 cut(s) 44, 415
TasI AATT 2 cut(s) 178, 246
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspGWI ACGGA 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.