Rmu_sc0018059.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018059.1
OG0012703
Physical Location & Seq
Forward (+)
16213 .. 16659
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018059.1_g000004.1.cds

Sequence Viewer

Length: 447 bp
atgcgatgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagtgctagaagagcactttggcaatgtccaagattcccttctccctgacttgaacgttcaatggaacaatctgcgctttgctgatttcaaatctgttactgaatataattcagaagctcttcgcctacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattatggtatcaaagcaatatcgtactgaagtcagtgctggactgatcacgaggtttcatcagcttattaatatcatatctgtagctgagaaacatgataacatactcgtgaggaattataattcaaggcccattggaactaagagtgtaacgtcccgaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

7.82

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 402
AclI AACGTT 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 4 cut(s) 124, 131, 160, 408
AhdI GACNNNNNGTC 1 cut(s) 227
AjuI GAANNNNNNNTTGG 4 cut(s) 72, 93, 104, 125
AluBI AGCT 5 cut(s) 64, 188, 244, 346, 368
AluI AGCT 5 cut(s) 64, 188, 244, 346, 368
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 1 cut(s) 410
AseI ATTAAT 1 cut(s) 351
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 411
BauI CACGAG 2 cut(s) 331, 389
Bbv12I GWGCWC 1 cut(s) 87
BclI TGATCA 1 cut(s) 327
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 197, 363
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 411
BmsI GCATC 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 100
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 40, 360
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 87
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 45, 327
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 39, 361
BspQI GCTCTTC 2 cut(s) 75, 195
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 2 cut(s) 45, 327
BssSI CACGAG 2 cut(s) 331, 389
Bst2BI CACGAG 2 cut(s) 331, 389
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 2 cut(s) 75, 195
BstDEI CTNAG 3 cut(s) 26, 369, 423
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 2 cut(s) 48, 330
BstMBI GATC 2 cut(s) 45, 327
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSFI CTRYAG 2 cut(s) 197, 363
BsuRI GGCC 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 322
CfoI GCGC 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 306
CviAII CATG 2 cut(s) 205, 377
CviJI RGCY 7 cut(s) 64, 188, 244, 281, 346, 368, 412
CviKI_1 RGCY 7 cut(s) 64, 188, 244, 281, 346, 368, 412
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 3 cut(s) 26, 369, 423
DpnI GATC 2 cut(s) 47, 329
DpnII GATC 2 cut(s) 45, 327
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 75, 195
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 2 cut(s) 208, 380
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 204, 376
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 327
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 412
HhaI GCGC 1 cut(s) 147
Hin1II CATG 2 cut(s) 208, 380
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 3 cut(s) 331, 391, 438
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 119, 277
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4IV ACGT 2 cut(s) 126, 434
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 3 cut(s) 26, 369, 423
HpySE526I ACGT 2 cut(s) 126, 434
Hsp92II CATG 2 cut(s) 208, 380
HspAI GCGC 1 cut(s) 145
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 2 cut(s) 45, 327
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 3 cut(s) 129, 240, 306
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 126, 434
MaeIII GTNAC 3 cut(s) 166, 229, 430
MalI GATC 2 cut(s) 47, 329
MboI GATC 2 cut(s) 45, 327
MboII GAAGA 2 cut(s) 92, 182
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 4 cut(s) 178, 246, 397, 403
MnlI CCTC 3 cut(s) 204, 327, 387
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 45, 327
NlaIII CATG 2 cut(s) 208, 380
NmuCI GTSAC 1 cut(s) 229
PciSI GCTCTTC 2 cut(s) 75, 195
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 351
PsiI TTATAA 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 126
PspPI GGNCC 1 cut(s) 411
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 389
SapI GCTCTTC 2 cut(s) 75, 195
SaqAI TTAA 1 cut(s) 351
Sau3AI GATC 2 cut(s) 45, 327
Sau96I GGNCC 1 cut(s) 411
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 197, 363
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 4 cut(s) 178, 246, 397, 403
SspMI CTAG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 201
TaiI ACGT 2 cut(s) 129, 437
TaqI TCGA 1 cut(s) 44
TasI AATT 4 cut(s) 178, 246, 397, 403
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 322
VspI ATTAAT 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.