Rmu_sc0000837.1_g000082

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000837.1
OG0012703
Physical Location & Seq
Forward (+)
402435 .. 402788
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000837.1_g000082.1.cds

Sequence Viewer

Length: 354 bp
atgtcgatcaaggatgcaagagacctatgggtagcgctagaagagcgctttggcaatatccaagattccctcctccctgacttgaaggttcagtggaacaacatacgattatccgacttcaagtctgttgctgaatacaattcagaagctcttcacctcaaagccatgttgaggttctatgaaaaacctctcacagaagaagaactaattgagaagactctctccaccattcccgtcgcagcacttgtgatatcaaagcaatatcgcactgaagtcaatgctggacgaattacgaagtttaatgagctcatcaatattatgtcggtagctgaaaagcacgacaacatcctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.53

Weight (kDa)

5.41

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 291
AfeI AGCGCT 2 cut(s) 36, 47
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 85, 121
AhdI GACNNNNNGTC 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 149, 307, 329
AluI AGCT 3 cut(s) 149, 307, 329
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 15
Aor51HI AGCGCT 2 cut(s) 36, 47
ApeKI GCWGC 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 37, 48
AsuHPI GGTGA 1 cut(s) 146
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 2 cut(s) 38, 49
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 121
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 19, 345
BseLI CCNNNNNNNGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 6
BspQI GCTCTTC 2 cut(s) 36, 156
BspTNI GGTCTC 1 cut(s) 15
BssMI GATC 1 cut(s) 6
Bst6I CTCTTC 2 cut(s) 36, 156
BstF5I GGATG 2 cut(s) 19, 345
BstH2I RGCGCY 2 cut(s) 38, 49
BstHHI GCGC 2 cut(s) 37, 48
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 19, 345
BtsIMutI CAGTG 2 cut(s) 98, 267
CfoI GCGC 2 cut(s) 37, 48
CviAII CATG 1 cut(s) 166
CviJI RGCY 4 cut(s) 149, 164, 307, 329
CviKI_1 RGCY 4 cut(s) 149, 164, 307, 329
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 36, 156
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 36, 156
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 15
Eco32I GATATC 1 cut(s) 252
Eco47III AGCGCT 2 cut(s) 36, 47
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 307
EcoRV GATATC 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 28, 104, 167, 180, 320
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 26, 332
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 36, 47
GluI GCNGC 1 cut(s) 240
HaeII RGCGCY 2 cut(s) 38, 49
HhaI GCGC 2 cut(s) 37, 48
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 2 cut(s) 35, 46
HinP1I GCGC 2 cut(s) 35, 46
HinfI GANTC 2 cut(s) 65, 217
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 115, 145
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 2 cut(s) 35, 46
Kzo9I GATC 1 cut(s) 6
LguI GCTCTTC 2 cut(s) 36, 156
LpnPI CCDG 2 cut(s) 90, 267
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 38
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 5 cut(s) 53, 143, 209, 212, 226
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 3 cut(s) 139, 207, 288
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 80, 83, 165, 167, 198
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 169
PciSI GCTCTTC 2 cut(s) 36, 156
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 309
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 2 cut(s) 36, 156
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 309
SetI ASST 8 cut(s) 27, 90, 151, 159, 176, 190, 309, 331
SfaNI GCATC 1 cut(s) 4
Sse9I AATT 3 cut(s) 139, 207, 288
SspI AATATT 1 cut(s) 316
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 309
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 139, 207, 288
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 98, 274
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 2 cut(s) 98, 274
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.