Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031747.1

Orthogroup ID

OG0012703

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1933

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031747.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgcttaagtgtaaagataggtatagtgacttgtatgataagctttatgtcaaaggggaacaagtatggttatctctatcatcacagccacaatgccacatgagaaagctagaaatggagctgtcatccaagttaagcccagaaccggtttcagaacccccagaaccggccggaaaccgcccgaaccagctgccggaagttctgaaccgctgccgagtcctgccgacctcctgccgaagtgctgccgacagccctgcctaccccctgcctagcatctgccgaagtgctgccgacagccctgcctaccccctgcctagcatctgccgagctgctgccgagctcctgccgaagtgctgccgacagccctgcctagcagctgccgagctgctgccgagcaactgtcgacacaactttccggcgacttttccggcaactttccgacaacttttccggccactttcggacaactttccggcgactttccggacacttttccggcgactttccgacaacttttccggtgacttttcagacacttttccggcgatttttcaacacctttttccggcaatattatttcaagtaattcacgctaaacgaactaagagcgttcgtaatcatgaactaagagtgttcataatattcggactaagagcttgggtaaccgacgttgagaaccacctcacttcaagaggaatattgcccataattcaagctcctaatccaggccttgtgttccaacgaacacctacaaagcatgcacaagctattatcttgatgcggcggcatatggataaagcactcagattagagtacatgtcaatcaaagatgcaagagacctatgggtagcgctagaagagcgttttggtaatatccaagataccctcctccctgacttgaaggttcagtggaataatatacgcttctccgactttaagtctgttgctgaatataactcggaagcccttcacctcaaagccatgttgaggttctgtgcaaagcctctcacagaagaagagctaattgagaagactctctccaccattcccgtctcagcaattgtgatatcaaagcaatatcgcacagaagtcaatgctggacgaattacaaggtttaatgagcttattaatcttttgtcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

380

Amino Acids

43.35

Weight (kDa)

9.17

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012703)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	483
AciI	CCGC	4 cut(s)	178, 208, 781, 784
AcoI	YGGCCR	2 cut(s)	168, 452
AfaI	GTAC	1 cut(s)	815
AfeI	AGCGCT	1 cut(s)	852
AfiI	CCNNNNNNNGG	6 cut(s)	145, 166, 193, 565, 725, 987
AflII	CTTAAG	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	816
AgeI	ACCGGT	1 cut(s)	145
AgsI	TTSAA	5 cut(s)	554, 581, 690, 713, 901
AhdI	GACNNNNNGTC	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	724
AjuI	GAANNNNNNNTTGG	2 cut(s)	849, 881
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	831, 1057
Aor13HI	TCCGGA	1 cut(s)	483
Aor51HI	AGCGCT	1 cut(s)	852
AoxI	GGCC	3 cut(s)	168, 452, 727
AseI	ATTAAT	1 cut(s)	1128
AsiGI	ACCGGT	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	966
AspLEI	GCGC	1 cut(s)	853
AsuHPI	GGTGA	2 cut(s)	533, 962
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	1037
Bbv12I	GWGCWC	1 cut(s)	342
BcgI	CGANNNNNNTGC	8 cut(s)	172, 206, 236, 270, 281, 315, 348, 382
BciT130I	CCWGG	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	831, 1057
BfaI	CTAG	5 cut(s)	110, 270, 315, 371, 854
BfoI	RGCGCY	1 cut(s)	854
BfrI	CTTAAG	1 cut(s)	5
Bme1390I	CCNGG	1 cut(s)	726
BmeRI	GACNNNNNGTC	1 cut(s)	937
BmrFI	CCNGG	1 cut(s)	726
BmsI	GCATC	4 cut(s)	282, 327, 768, 820
BpiI	GAAGAC	1 cut(s)	1037
BsaI	GGTCTC	1 cut(s)	831
BsaWI	WCCGGW	3 cut(s)	145, 483, 518
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 166, 193, 565, 725, 987
Bse118I	RCCGGY	2 cut(s)	145, 166
BseAI	TCCGGA	1 cut(s)	483
BseBI	CCWGG	1 cut(s)	726
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	6 cut(s)	145, 166, 193, 565, 725, 987
BseMII	CTCAG	2 cut(s)	817, 1068
BseRI	GAGGAG	1 cut(s)	878
BseX3I	CGGCCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	170, 454, 729
BshTI	ACCGGT	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	342
BslI	CCNNNNNNNGG	6 cut(s)	145, 166, 193, 565, 725, 987
BsmAI	GTCTC	2 cut(s)	831, 1057
BsmBI	CGTCTC	1 cut(s)	1057
BsnI	GGCC	3 cut(s)	170, 454, 729
Bso31I	GGTCTC	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	483
BspACI	CCGC	4 cut(s)	178, 208, 781, 784
BspANI	GGCC	3 cut(s)	170, 454, 729
BspCNI	CTCAG	2 cut(s)	816, 1067
BspEI	TCCGGA	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	619
BspQI	GCTCTTC	2 cut(s)	852, 1011
BspTI	CTTAAG	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	831
BsrFI	RCCGGY	2 cut(s)	145, 166
BssAI	RCCGGY	2 cut(s)	145, 166
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	2 cut(s)	852, 1011
BstAFI	CTTAAG	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	5 cut(s)	603, 626, 650, 803, 1054
BstEII	GGTNACC	1 cut(s)	661
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstMAI	GTCTC	2 cut(s)	831, 1057
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	859
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	2 cut(s)	761, 820
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	1037
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	3 cut(s)	170, 454, 729
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	914
Cac8I	GCNNGC	1 cut(s)	759
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	853
Cfr10I	RCCGGY	2 cut(s)	145, 166
Csp6I	GTAC	1 cut(s)	814
CspAI	ACCGGT	1 cut(s)	145
CviAII	CATG	5 cut(s)	100, 620, 758, 817, 982
CviQI	GTAC	1 cut(s)	814
DdeI	CTNAG	5 cut(s)	603, 626, 650, 803, 1054
DriI	GACNNNNNGTC	1 cut(s)	937
EaeI	YGGCCR	2 cut(s)	168, 452
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	852, 1011
Eam1105I	GACNNNNNGTC	1 cut(s)	937
EarI	CTCTTC	2 cut(s)	852, 1011
Ecl136II	GAGCTC	1 cut(s)	340
EclXI	CGGCCG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	1068
Eco47III	AGCGCT	1 cut(s)	852
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	661
EcoICRI	GAGCTC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	724
EcoRV	GATATC	1 cut(s)	1068
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	1057
FaeI	CATG	5 cut(s)	103, 623, 761, 820, 985
FatI	CATG	5 cut(s)	99, 619, 757, 816, 981
FauNDI	CATATG	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	342
FspBI	CTAG	5 cut(s)	110, 270, 315, 371, 854
GlaI	GCGC	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	3 cut(s)	170, 454, 729
HhaI	GCGC	1 cut(s)	853
Hin1II	CATG	5 cut(s)	103, 623, 761, 820, 985
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	216, 1033
HphI	GGTGA	2 cut(s)	533, 962
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	484, 620, 690, 775
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	2 cut(s)	895, 977
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	3 cut(s)	761, 833, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	859
HpyF3I	CTNAG	5 cut(s)	603, 626, 650, 803, 1054
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	5 cut(s)	103, 623, 761, 820, 985
HspAI	GCGC	1 cut(s)	851
Kpn2I	TCCGGA	1 cut(s)	483
LguI	GCTCTTC	2 cut(s)	852, 1011
LmnI	GCTCC	3 cut(s)	118, 345, 721
LweI	GCATC	4 cut(s)	282, 327, 768, 820
MaeI	CTAG	5 cut(s)	110, 270, 315, 371, 854
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	26, 521, 661
MboII	GAAGA	4 cut(s)	869, 1025, 1028, 1042
MfeI	CAATTG	1 cut(s)	1059
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	5 cut(s)	585, 708, 1023, 1059, 1104
MlyI	GAGTC	2 cut(s)	225, 1027
MmeI	TCCRAC	4 cut(s)	463, 531, 763, 954
MnlI	CCTC	8 cut(s)	238, 686, 692, 896, 899, 981, 983, 1014
MroI	TCCGGA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	966
MseI	TTAA	5 cut(s)	6, 134, 936, 1116, 1128
MspA1I	CMGCKG	3 cut(s)	190, 210, 377
MspCI	CTTAAG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	726
MunI	CAATTG	1 cut(s)	1059
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	1 cut(s)	859
NdeI	CATATG	1 cut(s)	789
NlaIII	CATG	5 cut(s)	103, 623, 761, 820, 985
NmeAIII	GCCGAG	5 cut(s)	239, 350, 361, 406, 417
NmuCI	GTSAC	2 cut(s)	26, 521
NspI	RCATGY	2 cut(s)	761, 820
PaeI	GCATGC	1 cut(s)	761
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	729
PciI	ACATGT	1 cut(s)	816
PciSI	GCTCTTC	2 cut(s)	852, 1011
PdmI	GAANNNNTTC	1 cut(s)	966
PinAI	ACCGGT	1 cut(s)	145
PleI	GAGTC	2 cut(s)	224, 1027
PpsI	GAGTC	2 cut(s)	224, 1027
PscI	ACATGT	1 cut(s)	816
PshBI	ATTAAT	1 cut(s)	1128
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	724
PspEI	GGTNACC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	724
PvuII	CAGCTG	2 cut(s)	190, 377
RsaI	GTAC	1 cut(s)	815
RsaNI	GTAC	1 cut(s)	814
SacI	GAGCTC	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	402
SapI	GCTCTTC	2 cut(s)	852, 1011
SaqAI	TTAA	5 cut(s)	6, 134, 936, 1116, 1128
SchI	GAGTC	2 cut(s)	225, 1027
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	4 cut(s)	282, 327, 768, 820
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	5 cut(s)	585, 708, 1023, 1059, 1104
SseBI	AGGCCT	1 cut(s)	729
SsiI	CCGC	4 cut(s)	178, 208, 781, 784
SspI	AATATT	3 cut(s)	573, 642, 699
SspMI	CTAG	5 cut(s)	110, 270, 315, 371, 854
SstI	GAGCTC	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	729
StyD4I	CCNGG	1 cut(s)	724
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	585, 708, 1023, 1059, 1104
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	2 cut(s)	784, 787
Tru1I	TTAA	5 cut(s)	6, 134, 936, 1116, 1128
Tru9I	TTAA	5 cut(s)	6, 134, 936, 1116, 1128
TscAI	CASTG	1 cut(s)	914
TseFI	GTSAC	2 cut(s)	26, 521
Tsp45I	GTSAC	2 cut(s)	26, 521
TspDTI	ATGAA	2 cut(s)	625, 636
TspRI	CASTG	1 cut(s)	914
Vha464I	CTTAAG	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	1128
XagI	CCTNNNNNAGG	1 cut(s)	723
XceI	RCATGY	2 cut(s)	761, 820
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	966
XspI	CTAG	5 cut(s)	110, 270, 315, 371, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.