Rmu_sc0001900.1_g000041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001900.1
OG0012703
Physical Location & Seq
Reverse (-)
207295 .. 207924
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001900.1_g000041.1.cds

Sequence Viewer

Length: 630 bp
atgcttgactcaacaggcttggattaccacagttgggtaactgatattgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccggatcgtgtgttcgtgcgaacacctacaaagcatgctcaagcagttatcttgatgctacgccatattgacaagacactcagattggagtatatgtcgatcaagtatgcaagagagctatggatagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaataatctgcgctttgctgatttcaagtctgttgctgaatataatttagaagctcttcgcctacagtccatgttgaggttttgtggacaacctatcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattggggtatcaaaccaataccgcactgaagtcaatgctggaaggatcacgagatttcatcagcttatcaatctcatatctgtagctcagaaacatgataacatactcgtgatgaattataattcaaggctcattggaactaagagcgttcagaggcgaattataatgcacccaaaagagggcgcaaggagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

209

Amino Acids

24.14

Weight (kDa)

9.41

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 555, 599
AccB1I GGYRCC 1 cut(s) 91
AciI CCGC 1 cut(s) 457
AclWI GGATC 2 cut(s) 111, 488
AcuI CTGAAG 1 cut(s) 483
AfeI AGCGCT 2 cut(s) 228, 239
AfiI CCNNNNNNNGG 4 cut(s) 34, 363, 613, 614
AgsI TTSAA 5 cut(s) 66, 277, 284, 313, 561
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 6 cut(s) 217, 341, 397, 499, 521, 627
AluI AGCT 6 cut(s) 217, 341, 397, 499, 521, 627
AlwI GGATC 2 cut(s) 111, 488
Aor51HI AGCGCT 2 cut(s) 228, 239
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 4 cut(s) 229, 240, 300, 620
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 91
BauI CACGAG 2 cut(s) 484, 542
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 350, 516
BfoI RGCGCY 2 cut(s) 230, 241
Bme1390I CCNGG 2 cut(s) 89, 101
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 363, 613, 614
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseLI CCNNNNNNNGG 4 cut(s) 34, 363, 613, 614
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 193, 536
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 4 cut(s) 34, 363, 613, 614
Bsp143I GATC 3 cut(s) 103, 198, 480
BspACI CCGC 1 cut(s) 457
BspCNI CTCAG 2 cut(s) 192, 535
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 111, 488
BspQI GCTCTTC 2 cut(s) 228, 348
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 3 cut(s) 103, 198, 480
BssSI CACGAG 2 cut(s) 484, 542
Bst2BI CACGAG 2 cut(s) 484, 542
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 32, 354
Bst6I CTCTTC 2 cut(s) 228, 348
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 179, 522, 576
BstH2I RGCGCY 2 cut(s) 230, 241
BstHHI GCGC 4 cut(s) 229, 240, 300, 620
BstKTI GATC 3 cut(s) 106, 201, 483
BstMBI GATC 3 cut(s) 103, 198, 480
BstMWI GCNNNNNNNGC 2 cut(s) 235, 624
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 87, 99
BstSFI CTRYAG 2 cut(s) 350, 516
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 4 cut(s) 229, 240, 300, 620
CviAII CATG 3 cut(s) 134, 358, 530
CviJI RGCY 9 cut(s) 18, 217, 341, 397, 434, 499, 521, 565, 627
CviKI_1 RGCY 9 cut(s) 18, 217, 341, 397, 434, 499, 521, 565, 627
DdeI CTNAG 3 cut(s) 179, 522, 576
DpnI GATC 3 cut(s) 105, 200, 482
DpnII GATC 3 cut(s) 103, 198, 480
Eam1104I CTCTTC 2 cut(s) 228, 348
EarI CTCTTC 2 cut(s) 228, 348
Eco47III AGCGCT 2 cut(s) 228, 239
Eco57I CTGAAG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 137, 361, 533
FatI CATG 3 cut(s) 133, 357, 529
FspBI CTAG 1 cut(s) 230
GlaI GCGC 4 cut(s) 228, 239, 299, 619
HaeII RGCGCY 2 cut(s) 230, 241
HapII CCGG 1 cut(s) 101
HhaI GCGC 4 cut(s) 229, 240, 300, 620
Hin1II CATG 3 cut(s) 137, 361, 533
Hin6I GCGC 4 cut(s) 227, 238, 298, 618
HinP1I GCGC 4 cut(s) 227, 238, 298, 618
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 182, 525, 588
Hpy188III TCNNGA 3 cut(s) 151, 484, 544
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 271, 430, 471
HpyCH4III ACNGT 2 cut(s) 32, 354
HpyCH4V TGCA 2 cut(s) 209, 604
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 624
HpyF3I CTNAG 3 cut(s) 179, 522, 576
Hsp92II CATG 3 cut(s) 137, 361, 533
HspAI GCGC 4 cut(s) 227, 238, 298, 618
Kzo9I GATC 3 cut(s) 103, 198, 480
LguI GCTCTTC 2 cut(s) 228, 348
LmnI GCTCC 1 cut(s) 624
LpnPI CCDG 5 cut(s) 74, 101, 114, 282, 459
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 105, 200, 482
MboI GATC 3 cut(s) 103, 198, 480
MboII GAAGA 2 cut(s) 245, 335
MluCI AATT 5 cut(s) 331, 399, 550, 556, 594
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 6 cut(s) 68, 272, 275, 357, 582, 607
MroXI GAANNNNTTC 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 235, 624
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 103, 198, 480
NlaIII CATG 3 cut(s) 137, 361, 533
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PciSI GCTCTTC 2 cut(s) 228, 348
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PsiI TTATAA 2 cut(s) 555, 599
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 542
SapI GCTCTTC 2 cut(s) 228, 348
Sau3AI GATC 3 cut(s) 103, 198, 480
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 2 cut(s) 89, 101
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 350, 516
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 5 cut(s) 331, 399, 550, 556, 594
SsiI CCGC 1 cut(s) 457
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 2 cut(s) 87, 99
TaaI ACNGT 2 cut(s) 32, 354
TaqI TCGA 1 cut(s) 197
TasI AATT 5 cut(s) 331, 399, 550, 556, 594
TfiI GAWTC 1 cut(s) 257
TscAI CASTG 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 482, 563
TspRI CASTG 1 cut(s) 466
XceI RCATGY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.