Rmu_sc0004542.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004542.1
Physical Location & Seq
Forward (+)
17522 .. 17911
390 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004542.1_g000005.1.cds

Sequence Viewer

Length: 390 bp
atgcgacgtcatatgggcaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgttttgtcaatgtccaagattccctcctccctgacttgaaggttcaatggaataatctgcgctttgctgatttcaagtgtgttgctgaatataattcagaggctcttcgcttacaatccatgttgagattttgtggacaacctgtcatagagcaagagctaattgagaaaactctctccaccttccccatttcagccattgtggtatcaaagcaataccgtactgaagtcaatgctggacggatcatgaggtttcatcagcttattaatgttatatctgtagctgaaaacatgataacatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

15.15

Weight (kDa)

8.64

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 10
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 7
AfaI GTAC 1 cut(s) 307
AfeI AGCGCT 1 cut(s) 75
AgsI TTSAA 3 cut(s) 124, 131, 160
AhdI GACNNNNNGTC 1 cut(s) 227
AluBI AGCT 4 cut(s) 64, 244, 346, 368
AluI AGCT 4 cut(s) 64, 244, 346, 368
AlwI GGATC 1 cut(s) 335
Aor51HI AGCGCT 1 cut(s) 75
AseI ATTAAT 1 cut(s) 351
AspLEI GCGC 2 cut(s) 76, 147
BfaI CTAG 2 cut(s) 77, 388
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 77
BmeRI GACNNNNNGTC 1 cut(s) 227
BmsI GCATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 101
Bsp143I GATC 2 cut(s) 45, 327
BspCNI CTCAG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 330
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 2 cut(s) 75, 195
BssMI GATC 2 cut(s) 45, 327
BssNI GRCGYC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 2 cut(s) 75, 195
BstACI GRCGYC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 76, 147
BstKTI GATC 2 cut(s) 48, 330
BstMBI GATC 2 cut(s) 45, 327
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 330
CfoI GCGC 2 cut(s) 76, 147
Csp6I GTAC 1 cut(s) 306
CviAII CATG 3 cut(s) 205, 331, 376
CviJI RGCY 6 cut(s) 64, 188, 244, 281, 346, 368
CviKI_1 RGCY 6 cut(s) 64, 188, 244, 281, 346, 368
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 47, 329
DpnII GATC 2 cut(s) 45, 327
DriI GACNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 75, 195
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 75, 195
Eco47III AGCGCT 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 330
FaeI CATG 3 cut(s) 208, 334, 379
FatI CATG 3 cut(s) 204, 330, 375
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 77, 388
GlaI GCGC 2 cut(s) 75, 146
HaeII RGCGCY 1 cut(s) 77
HhaI GCGC 2 cut(s) 76, 147
Hin1I GRCGYC 1 cut(s) 7
Hin1II CATG 3 cut(s) 208, 334, 379
Hin6I GCGC 2 cut(s) 74, 145
HinP1I GCGC 2 cut(s) 74, 145
HinfI GANTC 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 29, 184
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 118, 277
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 7
Hsp92II CATG 3 cut(s) 208, 334, 379
HspAI GCGC 2 cut(s) 74, 145
Kzo9I GATC 2 cut(s) 45, 327
LguI GCTCTTC 2 cut(s) 75, 195
LpnPI CCDG 3 cut(s) 129, 240, 306
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 77, 388
MaeII ACGT 1 cut(s) 7
MalI GATC 2 cut(s) 47, 329
MboI GATC 2 cut(s) 45, 327
MboII GAAGA 2 cut(s) 92, 182
MluCI AATT 2 cut(s) 178, 246
MnlI CCTC 4 cut(s) 119, 122, 178, 327
MseI TTAA 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 45, 327
NlaIII CATG 3 cut(s) 208, 334, 379
PagI TCATGA 1 cut(s) 330
PciSI GCTCTTC 2 cut(s) 75, 195
PfeI GAWTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 351
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SapI GCTCTTC 2 cut(s) 75, 195
SaqAI TTAA 1 cut(s) 351
Sau3AI GATC 2 cut(s) 45, 327
SetI ASST 9 cut(s) 10, 66, 129, 229, 246, 269, 338, 348, 370
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 363
Sse9I AATT 2 cut(s) 178, 246
SspMI CTAG 2 cut(s) 77, 388
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 178, 246
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 340
VspI ATTAAT 1 cut(s) 351
XspI CTAG 2 cut(s) 77, 388
ZraI GACGTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.