Rmu_sc0008240.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008240.1
OG0012703
Physical Location & Seq
Forward (+)
20318 .. 20896
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008240.1_g000008.1.cds

Sequence Viewer

Length: 579 bp
atgcttgattcaacaggctcagattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaacccggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcaattatcttgatgcgacgccaaatggacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagttatgggttgcgctagaagagcgttttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaatctacgctttgctgatttcaagtctgtagctgaatgtaattcagaagctcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctgattgagaaaactctctccaccttccctgtttcagccattgtgatatcaaagcaataccgtactgaagtcaatgttggacggatcatgaggtttcatcagcttatcaatgttatatctgtagctgagaaacatgacaacatactcgtgaggaattataattcaaggcctattggaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

192

Amino Acids

22.08

Weight (kDa)

8.58

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 2 cut(s) 111, 488
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 34, 363
AgsI TTSAA 6 cut(s) 12, 66, 277, 284, 313, 561
AhdI GACNNNNNGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 87
AjuI GAANNNNNNNTTGG 4 cut(s) 225, 257, 456, 488
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 323, 341, 397, 499, 521
AluI AGCT 5 cut(s) 323, 341, 397, 499, 521
AlwI GGATC 2 cut(s) 111, 488
AoxI GGCC 1 cut(s) 563
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 91
BauI CACGAG 1 cut(s) 542
BccI CCATC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 318, 516
Bme1390I CCNGG 2 cut(s) 89, 101
BmeRI GACNNNNNGTC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 89, 101
BmsI GCATC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 363
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 34, 363
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 3 cut(s) 33, 193, 513
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 1 cut(s) 565
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 34, 363
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 565
Bsp143I GATC 3 cut(s) 103, 198, 480
BspANI GGCC 1 cut(s) 565
BspCNI CTCAG 3 cut(s) 32, 192, 514
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 111, 488
BspQI GCTCTTC 2 cut(s) 228, 348
BspT107I GGYRCC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 253
BssMI GATC 3 cut(s) 103, 198, 480
BssNI GRCGYC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 32, 354, 458
Bst6I CTCTTC 2 cut(s) 228, 348
BstACI GRCGYC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 4 cut(s) 19, 179, 522, 576
BstEII GGTNACC 1 cut(s) 37
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 106, 201, 483
BstMBI GATC 3 cut(s) 103, 198, 480
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 137
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 87, 99
BstSFI CTRYAG 2 cut(s) 318, 516
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 229
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 459
CviAII CATG 4 cut(s) 134, 358, 484, 530
CviJI RGCY 8 cut(s) 18, 323, 341, 397, 434, 499, 521, 565
CviKI_1 RGCY 8 cut(s) 18, 323, 341, 397, 434, 499, 521, 565
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 4 cut(s) 19, 179, 522, 576
DpnI GATC 3 cut(s) 105, 200, 482
DpnII GATC 3 cut(s) 103, 198, 480
DriI GACNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 228, 348
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 2 cut(s) 228, 348
Eco147I AGGCCT 1 cut(s) 565
Eco32I GATATC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 483
Eco91I GGTNACC 1 cut(s) 37
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 444
FaeI CATG 4 cut(s) 137, 361, 487, 533
FatI CATG 4 cut(s) 133, 357, 483, 529
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 565
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 4 cut(s) 137, 361, 487, 533
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 8, 257
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 22, 182, 337
Hpy188III TCNNGA 4 cut(s) 151, 202, 484, 544
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 271, 430
HpyCH4III ACNGT 3 cut(s) 32, 354, 458
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 4 cut(s) 19, 179, 522, 576
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 4 cut(s) 137, 361, 487, 533
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 3 cut(s) 103, 198, 480
LguI GCTCTTC 2 cut(s) 228, 348
LpnPI CCDG 6 cut(s) 74, 101, 114, 282, 393, 438
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 37, 382
MalI GATC 3 cut(s) 105, 200, 482
MboI GATC 3 cut(s) 103, 198, 480
MboII GAAGA 2 cut(s) 245, 335
MflI RGATCY 1 cut(s) 103
MluCI AATT 4 cut(s) 144, 331, 550, 556
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 5 cut(s) 272, 275, 357, 480, 540
MroXI GAANNNNTTC 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 89, 101
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 103, 198, 480
NlaIII CATG 4 cut(s) 137, 361, 487, 533
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 137
PaeI GCATGC 1 cut(s) 137
PagI TCATGA 1 cut(s) 483
PceI AGGCCT 1 cut(s) 565
PciSI GCTCTTC 2 cut(s) 228, 348
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 8, 257
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 542
SapI GCTCTTC 2 cut(s) 228, 348
Sau3AI GATC 3 cut(s) 103, 198, 480
ScrFI CCNGG 2 cut(s) 89, 101
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 318, 516
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
SphI GCATGC 1 cut(s) 137
Sse9I AATT 4 cut(s) 144, 331, 550, 556
SseBI AGGCCT 1 cut(s) 565
SspI AATATT 1 cut(s) 75
SspMI CTAG 1 cut(s) 230
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 87, 99
TaaI ACNGT 3 cut(s) 32, 354, 458
TaqI TCGA 1 cut(s) 197
TasI AATT 4 cut(s) 144, 331, 550, 556
TfiI GAWTC 2 cut(s) 8, 257
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.