Rmu_sc0000766.1_g000001

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000766.1
OG0008870
Physical Location & Seq
Forward (+)
1 .. 1295
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1295 bp
cggagaaacttcgaaaactgaaggaggatgcctacaatccccgcgctgtctcaattggacctttccatcgaggcaaaagtaaccttgcacaaatggaacaccataaactattttacacggcatcctttcttgcttggtttattgcgagtagcgaagctactgaaaaatacatggagagttacatcaaacatcctattggccctctacatgttgattggccggttaataaatgctacaatgaagagatcaaatgcgaagaaggcagggataagcttaatgaattgctacaagatggctgcttcatattgcaacttttcctcagctttgcccaactgatcaaggatagttcagacgaatacgaatctgatccattaataaacaatgcttggatgatcagagatctttggcacgatctagcattgcttgaaaaccaaatccccttctttgtcctcgaaattttatatgacattgtcaagccttgtgtaatgaaaatgaacaacggcaaagcaccagagtcggtcagtagtcttgctttaaatttctttaagcctatgctgagccaaaactcaaatatagtggagcattcgtacccggactgcaaacatttgcttgatctcttgcataaatcctccctgctcgcagtttcaggagatactgctttcacagtctatgacgtcagagatcggagatcgacaatggctttaaaccatgctgcagctgctaatttgagtccagggaatcaatattggggattaaaatattgcgctgaagaacttgtacagtccggaattgagcttcgtaaagagtcaggggactctctggtgaacataaccgccacaagcgaccgccagctgatcatcaacatcccaccggtgttcattgacgaggtaagggattcactcttcaggaacctgattgcctacgaacaaagcagtatcaaaattagtcatcatgtcacatcttatgttatcctcatgaaaagtcttgtccgttctccacgagatgtcaagcttcttaggaaaaaaggcatcatatctcagtattggatcgaagaccaagaatatttaagttgcttcgtaagttttctagatgaagtttttcccagggacttctatttcagttctttgtgtggccaagtggatgcctacgcgaataagttctggtttcgtagaaagatgagcgctctttatcgcacttatttctcaacagcctggagtatgacatcattcattgctgccatttgccttttcattctcacagtcttacaaacatactttaccatcaaccctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

430

Amino Acids

49.69

Weight (kDa)

6.34

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 418 2.4e-88 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 677
AccII CGCG 2 cut(s) 44, 1150
AccIII TCCGGA 1 cut(s) 784
AciI CCGC 3 cut(s) 42, 833, 846
AclWI GGATC 2 cut(s) 361, 1054
AcoI YGGCCR 2 cut(s) 217, 1131
AcsI RAATTY 2 cut(s) 455, 537
AcuI CTGAAG 3 cut(s) 40, 788, 888
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 2 cut(s) 589, 779
AfeI AGCGCT 1 cut(s) 1182
AflIII ACRYGT 1 cut(s) 207
AgeI ACCGGT 1 cut(s) 870
AgsI TTSAA 1 cut(s) 427
AjnI CCWGG 3 cut(s) 732, 1102, 1210
AluBI AGCT 7 cut(s) 157, 273, 323, 718, 795, 852, 1011
AluI AGCT 7 cut(s) 157, 273, 323, 718, 795, 852, 1011
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 361, 1054
Aor13HI TCCGGA 1 cut(s) 784
Aor51HI AGCGCT 1 cut(s) 1182
AoxI GGCC 3 cut(s) 198, 217, 1131
ApeKI GCWGC 5 cut(s) 296, 712, 715, 718, 1234
ApoI RAATTY 2 cut(s) 455, 537
AseI ATTAAT 1 cut(s) 373
AsiGI ACCGGT 1 cut(s) 870
Asp700I GAANNNNTTC 2 cut(s) 1097, 1156
AspLEI GCGC 3 cut(s) 46, 766, 1183
AspS9I GGNCC 2 cut(s) 58, 199
AsuC2I CCSGG 1 cut(s) 592
AsuHPI GGTGA 1 cut(s) 834
AsuII TTCGAA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 58
BalI TGGCCA 1 cut(s) 1133
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BauI CACGAG 1 cut(s) 998
BbsI GAAGAC 1 cut(s) 1058
BbvCI CCTCAGC 1 cut(s) 319
BbvI GCAGC 5 cut(s) 283, 699, 705, 727, 1221
BccI CCATC 3 cut(s) 74, 286, 1288
BceAI ACGGC 2 cut(s) 134, 516
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 3 cut(s) 734, 1104, 1212
BclI TGATCA 3 cut(s) 335, 392, 854
BcnI CCSGG 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 415, 1087
BfmI CTRYAG 1 cut(s) 713
BfoI RGCGCY 1 cut(s) 1184
BglII AGATCT 1 cut(s) 399
BisI GCNGC 5 cut(s) 297, 713, 716, 719, 1235
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 5 cut(s) 298, 714, 717, 720, 1236
Bme1390I CCNGG 4 cut(s) 592, 734, 1104, 1212
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 199
BmiI GGNNCC 1 cut(s) 910
BmrFI CCNGG 4 cut(s) 592, 734, 1104, 1212
BmsI GCATC 4 cut(s) 18, 130, 1037, 1131
BpiI GAAGAC 1 cut(s) 1058
BpmI CTGGAG 1 cut(s) 1233
Bpu10I CCTNAGC 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 556
Bpu14I TTCGAA 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 592
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 3 cut(s) 733, 1102, 1103
BsaWI WCCGGW 2 cut(s) 784, 870
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bse118I RCCGGY 2 cut(s) 219, 870
Bse3DI GCAATG 2 cut(s) 418, 1229
BseAI TCCGGA 1 cut(s) 784
BseBI CCWGG 3 cut(s) 734, 1104, 1212
BseDI CCNNGG 3 cut(s) 733, 1102, 1103
BseGI GGATG 6 cut(s) 33, 121, 189, 395, 863, 1146
BseMI GCAATG 2 cut(s) 418, 1229
BseMII CTCAG 3 cut(s) 333, 547, 1051
BseXI GCAGC 5 cut(s) 283, 699, 705, 727, 1221
Bsh1236I CGCG 2 cut(s) 44, 1150
Bsh1285I CGRYCG 1 cut(s) 846
BshFI GGCC 3 cut(s) 200, 219, 1133
BshTI ACCGGT 1 cut(s) 870
BsiEI CGRYCG 1 cut(s) 846
BsiSI CCGG 4 cut(s) 220, 592, 785, 871
BslFI GGGAC 2 cut(s) 826, 1120
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 2 cut(s) 826, 1120
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 3 cut(s) 200, 219, 1133
Bsp119I TTCGAA 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 784
Bsp1407I TGTACA 1 cut(s) 777
Bsp1720I GCTNAGC 1 cut(s) 556
BspACI CCGC 3 cut(s) 42, 833, 846
BspANI GGCC 3 cut(s) 200, 219, 1133
BspCNI CTCAG 3 cut(s) 332, 548, 1050
BspEI TCCGGA 1 cut(s) 784
BspFNI CGCG 2 cut(s) 44, 1150
BspHI TCATGA 1 cut(s) 974
BspLI GGNNCC 1 cut(s) 910
BspMAI CTGCAG 1 cut(s) 717
BspPI GGATC 2 cut(s) 361, 1054
BspT104I TTCGAA 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 418, 1229
BsrFI RCCGGY 2 cut(s) 219, 870
BsrGI TGTACA 1 cut(s) 777
BssAI RCCGGY 2 cut(s) 219, 870
BssECI CCNNGG 3 cut(s) 733, 1102, 1103
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 998
Bst2BI CACGAG 1 cut(s) 998
Bst2UI CCWGG 3 cut(s) 734, 1104, 1212
Bst4CI ACNGT 3 cut(s) 666, 782, 1260
Bst6I CTCTTC 2 cut(s) 236, 907
BstACI GRCGYC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 638, 850
BstDEI CTNAG 4 cut(s) 319, 556, 1015, 1037
BstF5I GGATG 6 cut(s) 33, 121, 189, 395, 863, 1146
BstFNI CGCG 2 cut(s) 44, 1150
BstH2I RGCGCY 1 cut(s) 1184
BstHHI GCGC 3 cut(s) 46, 766, 1183
BstMAI GTCTC 1 cut(s) 54
BstMCI CGRYCG 1 cut(s) 846
BstMWI GCNNNNNNNGC 2 cut(s) 260, 718
BstNI CCWGG 3 cut(s) 734, 1104, 1212
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 4 cut(s) 590, 732, 1102, 1210
BstSFI CTRYAG 1 cut(s) 713
BstUI CGCG 2 cut(s) 44, 1150
BstV1I GCAGC 5 cut(s) 283, 699, 705, 727, 1221
BstV2I GAAGAC 1 cut(s) 1058
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BsuRI GGCC 3 cut(s) 200, 219, 1133
BtsCI GGATG 6 cut(s) 33, 121, 189, 395, 863, 1146
Cac8I GCNNGC 2 cut(s) 638, 850
CciI TCATGA 1 cut(s) 974
CfoI GCGC 3 cut(s) 46, 766, 1183
Cfr10I RCCGGY 2 cut(s) 219, 870
Cfr13I GGNCC 2 cut(s) 58, 199
Csp6I GTAC 2 cut(s) 588, 778
CspAI ACCGGT 1 cut(s) 870
CspCI CAANNNNNGTGG 2 cut(s) 557, 592
CviAII CATG 5 cut(s) 171, 208, 709, 952, 975
CviQI GTAC 2 cut(s) 588, 778
DdeI CTNAG 4 cut(s) 319, 556, 1015, 1037
DraI TTTAAA 2 cut(s) 536, 704
EaeI YGGCCR 2 cut(s) 217, 1131
Eam1104I CTCTTC 2 cut(s) 236, 907
EarI CTCTTC 2 cut(s) 236, 907
Eco47I GGWCC 1 cut(s) 58
Eco47III AGCGCT 1 cut(s) 1182
Eco57I CTGAAG 3 cut(s) 40, 788, 888
EcoRII CCWGG 3 cut(s) 732, 1102, 1210
FaeI CATG 5 cut(s) 174, 211, 712, 955, 978
FaqI GGGAC 2 cut(s) 826, 1120
FatI CATG 5 cut(s) 170, 207, 708, 951, 974
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 3 cut(s) 335, 392, 854
Fnu4HI GCNGC 5 cut(s) 297, 713, 716, 719, 1235
FokI GGATG 6 cut(s) 40, 108, 176, 402, 850, 1153
Fsp4HI GCNGC 5 cut(s) 297, 713, 716, 719, 1235
FspBI CTAG 2 cut(s) 415, 1087
GlaI GCGC 3 cut(s) 45, 765, 1182
GluI GCNGC 5 cut(s) 297, 713, 716, 719, 1235
GsuI CTGGAG 1 cut(s) 1233
HaeII RGCGCY 1 cut(s) 1184
HaeIII GGCC 3 cut(s) 200, 219, 1133
HapII CCGG 4 cut(s) 220, 592, 785, 871
HhaI GCGC 3 cut(s) 46, 766, 1183
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 5 cut(s) 174, 211, 712, 955, 978
Hin6I GCGC 3 cut(s) 44, 764, 1181
HinP1I GCGC 3 cut(s) 44, 764, 1181
HindIII AAGCTT 2 cut(s) 271, 1009
HinfI GANTC 7 cut(s) 361, 514, 729, 738, 805, 814, 895
HpaII CCGG 4 cut(s) 220, 592, 785, 871
HphI GGTGA 1 cut(s) 834
Hpy166II GTNNAC 1 cut(s) 825
Hpy188I TCNGA 5 cut(s) 351, 366, 397, 679, 686
Hpy188III TCNNGA 5 cut(s) 647, 785, 906, 975, 1087
Hpy8I GTNNAC 1 cut(s) 825
HpyAV CCTTC 3 cut(s) 15, 253, 450
HpyCH4III ACNGT 3 cut(s) 666, 782, 1260
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 5 cut(s) 88, 309, 599, 621, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 718
HpyF3I CTNAG 4 cut(s) 319, 556, 1015, 1037
HpySE526I ACGT 1 cut(s) 674
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 5 cut(s) 174, 211, 712, 955, 978
HspAI GCGC 3 cut(s) 44, 764, 1181
Kpn2I TCCGGA 1 cut(s) 784
Ksp22I TGATCA 3 cut(s) 335, 392, 854
LmnI GCTCC 1 cut(s) 579
Lsp1109I GCAGC 5 cut(s) 283, 699, 705, 727, 1221
LweI GCATC 4 cut(s) 18, 130, 1037, 1131
MaeI CTAG 2 cut(s) 415, 1087
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 3 cut(s) 79, 178, 954
MboII GAAGA 5 cut(s) 253, 268, 781, 894, 1063
MfeI CAATTG 1 cut(s) 53
MflI RGATCY 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 7 cut(s) 53, 280, 455, 537, 723, 788, 941
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 4 cut(s) 523, 738, 808, 814
MnlI CCTC 8 cut(s) 18, 64, 212, 328, 460, 639, 879, 982
Mox20I TGGCCA 1 cut(s) 1133
MroI TCCGGA 1 cut(s) 784
MroXI GAANNNNTTC 2 cut(s) 1097, 1156
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 8 cut(s) 224, 275, 373, 535, 545, 703, 754, 1066
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 2 cut(s) 718, 852
MspI CCGG 4 cut(s) 220, 592, 785, 871
MspR9I CCNGG 4 cut(s) 592, 734, 1104, 1212
MunI CAATTG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 582
MvaI CCWGG 3 cut(s) 734, 1104, 1212
MvnI CGCG 2 cut(s) 44, 1150
MwoI GCNNNNNNNGC 2 cut(s) 260, 718
NciI CCSGG 1 cut(s) 592
NlaIII CATG 5 cut(s) 174, 211, 712, 955, 978
NlaIV GGNNCC 1 cut(s) 910
NmuCI GTSAC 1 cut(s) 954
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 1 cut(s) 12
PagI TCATGA 1 cut(s) 974
PasI CCCWGGG 1 cut(s) 1103
PciI ACATGT 1 cut(s) 207
PctI GAATGC 1 cut(s) 582
PdmI GAANNNNTTC 2 cut(s) 1097, 1156
PfeI GAWTC 3 cut(s) 361, 738, 895
PflFI GACNNNGTC 1 cut(s) 469
PinAI ACCGGT 1 cut(s) 870
PkrI GCNGC 5 cut(s) 298, 714, 717, 720, 1236
PleI GAGTC 4 cut(s) 522, 737, 808, 813
PpsI GAGTC 4 cut(s) 522, 737, 808, 813
PscI ACATGT 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 732, 1102, 1210
PspGI CCWGG 3 cut(s) 732, 1102, 1210
PspN4I GGNNCC 1 cut(s) 910
PspPI GGNCC 2 cut(s) 58, 199
PstI CTGCAG 1 cut(s) 717
PsuI RGATCY 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 469
PvuII CAGCTG 2 cut(s) 718, 852
RsaI GTAC 2 cut(s) 589, 779
RsaNI GTAC 2 cut(s) 588, 778
SaqAI TTAA 8 cut(s) 224, 275, 373, 535, 545, 703, 754, 1066
SatI GCNGC 5 cut(s) 297, 713, 716, 719, 1235
Sau96I GGNCC 2 cut(s) 58, 199
SchI GAGTC 4 cut(s) 523, 738, 808, 814
ScrFI CCNGG 4 cut(s) 592, 734, 1104, 1212
SfaNI GCATC 4 cut(s) 18, 130, 1037, 1131
SfcI CTRYAG 1 cut(s) 713
SfuI TTCGAA 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 870
SinI GGWCC 1 cut(s) 58
Sse9I AATT 7 cut(s) 53, 280, 455, 537, 723, 788, 941
SsiI CCGC 3 cut(s) 42, 833, 846
SspI AATATT 3 cut(s) 745, 760, 1063
SspMI CTAG 2 cut(s) 415, 1087
StyD4I CCNGG 4 cut(s) 590, 732, 1102, 1210
TaaI ACNGT 3 cut(s) 666, 782, 1260
TaiI ACGT 1 cut(s) 677
TaqI TCGA 5 cut(s) 12, 69, 452, 691, 1049
TaqII GACCGA 1 cut(s) 507
TasI AATT 7 cut(s) 53, 280, 455, 537, 723, 788, 941
TatI WGTACW 1 cut(s) 777
TfiI GAWTC 3 cut(s) 361, 738, 895
Tru1I TTAA 8 cut(s) 224, 275, 373, 535, 545, 703, 754, 1066
Tru9I TTAA 8 cut(s) 224, 275, 373, 535, 545, 703, 754, 1066
TseFI GTSAC 1 cut(s) 954
TseI GCWGC 5 cut(s) 296, 712, 715, 718, 1234
Tsp45I GTSAC 1 cut(s) 954
TspGWI ACGGA 1 cut(s) 979
Tth111I GACNNNGTC 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 58
VspI ATTAAT 1 cut(s) 373
XapI RAATTY 2 cut(s) 455, 537
XbaI TCTAGA 1 cut(s) 1086
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 2 cut(s) 1097, 1156
XspI CTAG 2 cut(s) 415, 1087
ZraI GACGTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.