Rmu_sc0000766.1_g000002

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000766.1
OG0008870
Physical Location & Seq
Forward (+)
5417 .. 8149
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
atggagcagctgggggaggtagggaggtcgtggagagagccggacggaatgagcctacggggaggatctggcagagggagaggtgacgtgtgtgaagaaaccccgacggagggggtggagaagctggaagtggaggaggagtgggagcacgaagctctaacccaagtttcacagatactgaagcggatgaaggtggatatcgacaataagctcgacagcatccccgtgtcgcgtctcaacacagagaaagagataagagtggagactcgcatctgtagagttcctgagaaacttcgagaactgaaggaggatgcctgcaatccccgagttgtttcaattggacctttccattcctgtaaggattaccttgcaccaatgtcaagacataaatactattacatgtcccttctcattcacagcaaagatgctgaaaactgcttggatgaatgtatctgcgctattactgattttgacgttgtgattcgtcaatgctacgtcgaagatatcagtgtttcaaatgatgagcttagactaatgatgttagttgatggctgcttcatattggaacttcttctcaggttagcacctaacttggagtatataatgccacaagaatacgaatctgatccattaataaacaatgcttggatgatcagagctctttggcacgatctagcattgcttgaaaaccagattcccttctttattctggaaaagttatacgatattatcaagcctcgtttaatgagcaagtgcagagcaccagattcggtcactagtcttgttttaagtttctttaagcctatgatgagccaaaactcaaatatagaggagcattcgtacccggactgcaaacatttgcttgatctcttgcacaaatgccccctgcttgcagcttctggagtagatactgccttcacagcctacgactccggaattgagctttttaaagagtcagaggctgactctttggtgaacataaccgccgcgagacacggccagctgatcaaaatcccaccgctgttcattgatgaggtaagggattcactcttcaggaacttgattgcctacgagcaaagcagtattaaaattagtcatcatgttacatcttatgttatcctcatgaaaagtcttatacgttctccacgagatgtaaagcttcttaagaaaaaaggcatcatatctcagtattggattgacgaccaagaatattcaacttacttcagaagtcttctagatgaagtttttcctacggacttctatttcggttctctgtgttgccaagtggatgcctacgcgaataagttctggtttcgtagaaagatgagcgctctttatcacacttatttctcaacagcatggagtatgacatcattcattgctgccatttgccttttcattctcacggtcttacaaacatactttaccatcaacccagctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

481

Amino Acids

55.61

Weight (kDa)

5.38

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 91 - 468 1.8e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 232, 989, 1298
AccIII TCCGGA 1 cut(s) 932
AciI CCGC 4 cut(s) 184, 984, 987, 1019
AclWI GGATC 2 cut(s) 73, 620
AcoI YGGCCR 1 cut(s) 997
AcuI CTGAAG 4 cut(s) 200, 323, 1036, 1207
AfaI GTAC 1 cut(s) 842
AfeI AGCGCT 1 cut(s) 1330
AfiI CCNNNNNNNGG 2 cut(s) 109, 110
AflII CTTAAG 1 cut(s) 1163
AflIII ACRYGT 2 cut(s) 87, 399
AgsI TTSAA 4 cut(s) 336, 516, 686, 1215
AhlI ACTAGT 1 cut(s) 776
AjiI CACGTC 1 cut(s) 88
Alw21I GWGCWC 3 cut(s) 150, 661, 763
Alw26I GTCTC 3 cut(s) 239, 257, 985
AlwI GGATC 2 cut(s) 73, 620
AlwNI CAGNNNCTG 3 cut(s) 178, 899, 962
Ama87I CYCGRG 1 cut(s) 324
Aor13HI TCCGGA 1 cut(s) 932
Aor51HI AGCGCT 1 cut(s) 1330
AoxI GGCC 1 cut(s) 997
ApeKI GCWGC 4 cut(s) 7, 552, 893, 1382
ArsI GACNNNNNNTTYG 2 cut(s) 1247, 1279
AseI ATTAAT 1 cut(s) 632
Asp700I GAANNNNTTC 3 cut(s) 570, 1245, 1304
AspLEI GCGC 2 cut(s) 458, 1331
AspS9I GGNCC 1 cut(s) 341
AsuC2I CCSGG 1 cut(s) 845
AsuHPI GGTGA 2 cut(s) 95, 985
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 661
BauI CACGAG 1 cut(s) 1146
BbsI GAAGAC 1 cut(s) 1223
Bbv12I GWGCWC 3 cut(s) 150, 661, 763
BbvI GCAGC 4 cut(s) 19, 539, 905, 1369
BccI CCATC 2 cut(s) 542, 1436
BceAI ACGGC 1 cut(s) 1012
BcgI CGANNNNNNTGC 2 cut(s) 750, 784
BclI TGATCA 2 cut(s) 651, 1005
BcnI CCSGG 1 cut(s) 845
BcoDI GTCTC 3 cut(s) 239, 257, 985
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 3 cut(s) 674, 777, 1235
BfmI CTRYAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 1332
BfrI CTTAAG 1 cut(s) 1163
BisI GCNGC 5 cut(s) 8, 553, 894, 987, 1383
BlsI GCNGC 5 cut(s) 9, 554, 895, 988, 1384
Bme1390I CCNGG 1 cut(s) 845
Bme18I GGWCC 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 845
BmsI GCATC 6 cut(s) 228, 279, 301, 415, 1185, 1279
BpiI GAAGAC 1 cut(s) 1223
BplI GAGNNNNNCTC 2 cut(s) 950, 982
BpmI CTGGAG 1 cut(s) 921
BpuMI CCSGG 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1010
BsaWI WCCGGW 1 cut(s) 932
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 824, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 110
Bse3DI GCAATG 2 cut(s) 677, 1377
Bse8I GATNNNNATC 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 932
BseGI GGATG 6 cut(s) 192, 219, 316, 448, 654, 1294
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 2 cut(s) 109, 110
BseMI GCAATG 2 cut(s) 677, 1377
BseMII CTCAG 3 cut(s) 276, 589, 1199
BseRI GAGGAG 3 cut(s) 149, 152, 845
BseXI GCAGC 4 cut(s) 19, 539, 905, 1369
BseYI CCCAGC 2 cut(s) 10, 1435
BsgI GTGCAG 1 cut(s) 775
Bsh1236I CGCG 3 cut(s) 232, 989, 1298
BshFI GGCC 1 cut(s) 999
BsiHKAI GWGCWC 3 cut(s) 150, 661, 763
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 3 cut(s) 41, 845, 933
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 2 cut(s) 109, 110
BsmAI GTCTC 3 cut(s) 239, 257, 985
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 1 cut(s) 999
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 3 cut(s) 150, 661, 763
Bsp13I TCCGGA 1 cut(s) 932
Bsp143I GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
BspACI CCGC 4 cut(s) 184, 984, 987, 1019
BspANI GGCC 1 cut(s) 999
BspCNI CTCAG 3 cut(s) 277, 588, 1198
BspEI TCCGGA 1 cut(s) 932
BspFNI CGCG 3 cut(s) 232, 989, 1298
BspHI TCATGA 1 cut(s) 1122
BspPI GGATC 2 cut(s) 73, 620
BspTI CTTAAG 1 cut(s) 1163
BsrDI GCAATG 2 cut(s) 677, 1377
BssMI GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
BssSI CACGAG 1 cut(s) 1146
Bst2BI CACGAG 1 cut(s) 1146
Bst4CI ACNGT 1 cut(s) 1408
Bst6I CTCTTC 1 cut(s) 1055
BstAFI CTTAAG 1 cut(s) 1163
BstC8I GCNNGC 4 cut(s) 316, 891, 1001, 1441
BstDEI CTNAG 4 cut(s) 285, 527, 575, 1185
BstF5I GGATG 6 cut(s) 192, 219, 316, 448, 654, 1294
BstFNI CGCG 3 cut(s) 232, 989, 1298
BstH2I RGCGCY 1 cut(s) 1332
BstHHI GCGC 2 cut(s) 458, 1331
BstKTI GATC 6 cut(s) 68, 628, 654, 673, 868, 1008
BstMAI GTCTC 3 cut(s) 239, 257, 985
BstMBI GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 843
BstSFI CTRYAG 1 cut(s) 274
BstUI CGCG 3 cut(s) 232, 989, 1298
BstV1I GCAGC 4 cut(s) 19, 539, 905, 1369
BstV2I GAAGAC 1 cut(s) 1223
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 999
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 6 cut(s) 192, 219, 316, 448, 654, 1294
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 4 cut(s) 316, 891, 1001, 1441
CaiI CAGNNNCTG 3 cut(s) 178, 899, 962
CciI TCATGA 1 cut(s) 1122
CfoI GCGC 2 cut(s) 458, 1331
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 841
CviAII CATG 4 cut(s) 400, 1100, 1123, 1359
CviQI GTAC 1 cut(s) 841
DdeI CTNAG 4 cut(s) 285, 527, 575, 1185
DpnI GATC 6 cut(s) 67, 627, 653, 672, 867, 1007
DpnII GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
DraI TTTAAA 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 997
Eam1104I CTCTTC 1 cut(s) 1055
EarI CTCTTC 1 cut(s) 1055
Ecl136II GAGCTC 1 cut(s) 659
Eco24I GRGCYC 1 cut(s) 661
Eco32I GATATC 2 cut(s) 199, 505
Eco47I GGWCC 1 cut(s) 341
Eco47III AGCGCT 1 cut(s) 1330
Eco53kI GAGCTC 1 cut(s) 659
Eco57I CTGAAG 4 cut(s) 200, 323, 1036, 1207
Eco88I CYCGRG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 659
EcoRV GATATC 2 cut(s) 199, 505
EcoT38I GRGCYC 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 4 cut(s) 403, 1103, 1126, 1362
FaqI GGGAC 1 cut(s) 388
FatI CATG 4 cut(s) 399, 1099, 1122, 1358
FbaI TGATCA 2 cut(s) 651, 1005
Fnu4HI GCNGC 5 cut(s) 8, 553, 894, 987, 1383
FokI GGATG 6 cut(s) 199, 206, 323, 455, 661, 1301
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 5 cut(s) 8, 553, 894, 987, 1383
FspBI CTAG 3 cut(s) 674, 777, 1235
GlaI GCGC 2 cut(s) 457, 1330
GluI GCNGC 5 cut(s) 8, 553, 894, 987, 1383
GsaI CCCAGC 2 cut(s) 14, 1439
GsuI CTGGAG 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 1332
HaeIII GGCC 1 cut(s) 999
HapII CCGG 3 cut(s) 41, 845, 933
HgaI GACGC 1 cut(s) 221
HhaI GCGC 2 cut(s) 458, 1331
Hin1II CATG 4 cut(s) 403, 1103, 1126, 1362
Hin6I GCGC 2 cut(s) 456, 1329
HinP1I GCGC 2 cut(s) 456, 1329
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 9 cut(s) 265, 481, 620, 694, 767, 929, 953, 965, 1043
HpaII CCGG 3 cut(s) 41, 845, 933
HphI GGTGA 2 cut(s) 95, 985
Hpy166II GTNNAC 1 cut(s) 976
Hpy188I TCNGA 4 cut(s) 625, 656, 958, 1226
Hpy188III TCNNGA 9 cut(s) 284, 296, 381, 710, 900, 933, 1054, 1123, 1235
Hpy8I GTNNAC 1 cut(s) 976
Hpy99I CGWCG 2 cut(s) 109, 500
HpyAV CCTTC 5 cut(s) 184, 298, 416, 709, 925
HpyCH4III ACNGT 1 cut(s) 1408
HpyCH4IV ACGT 4 cut(s) 87, 474, 495, 1138
HpyCH4V TGCA 6 cut(s) 318, 371, 756, 852, 874, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 4 cut(s) 285, 527, 575, 1185
HpySE526I ACGT 4 cut(s) 87, 474, 495, 1138
Hsp92II CATG 4 cut(s) 403, 1103, 1126, 1362
HspAI GCGC 2 cut(s) 456, 1329
Kpn2I TCCGGA 1 cut(s) 932
Ksp22I TGATCA 2 cut(s) 651, 1005
Kzo9I GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
LmnI GCTCC 3 cut(s) 4, 145, 832
Lsp1109I GCAGC 4 cut(s) 19, 539, 905, 1369
LweI GCATC 6 cut(s) 228, 279, 301, 415, 1185, 1279
MaeI CTAG 3 cut(s) 674, 777, 1235
MaeII ACGT 4 cut(s) 87, 474, 495, 1138
MaeIII GTNAC 3 cut(s) 83, 772, 1102
MalI GATC 6 cut(s) 67, 627, 653, 672, 867, 1007
MboI GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
MboII GAAGA 5 cut(s) 107, 512, 563, 1042, 1223
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 150, 661, 763
MluCI AATT 3 cut(s) 336, 936, 1089
MlyI GAGTC 4 cut(s) 259, 923, 959, 962
MroI TCCGGA 1 cut(s) 932
MroXI GAANNNNTTC 3 cut(s) 570, 1245, 1304
MseI TTAA 7 cut(s) 632, 743, 788, 798, 948, 1086, 1164
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 3 cut(s) 10, 1003, 1021
MspCI CTTAAG 1 cut(s) 1163
MspI CCGG 3 cut(s) 41, 845, 933
MspR9I CCNGG 1 cut(s) 845
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 835
MvnI CGCG 3 cut(s) 232, 989, 1298
MwoI GCNNNNNNNGC 1 cut(s) 920
NciI CCSGG 1 cut(s) 845
NdeII GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
NlaIII CATG 4 cut(s) 403, 1103, 1126, 1362
NmuCI GTSAC 2 cut(s) 83, 772
NspI RCATGY 1 cut(s) 403
PagI TCATGA 1 cut(s) 1122
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 1144
PctI GAATGC 1 cut(s) 835
PdmI GAANNNNTTC 3 cut(s) 570, 1245, 1304
PfeI GAWTC 5 cut(s) 481, 620, 694, 767, 1043
PkrI GCNGC 5 cut(s) 9, 554, 895, 988, 1384
PleI GAGTC 4 cut(s) 259, 923, 959, 961
PpsI GAGTC 4 cut(s) 259, 923, 959, 961
PscI ACATGT 1 cut(s) 399
PshBI ATTAAT 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 661
PspFI CCCAGC 2 cut(s) 10, 1435
PspPI GGNCC 1 cut(s) 341
PstNI CAGNNNCTG 3 cut(s) 178, 899, 962
PsuI RGATCY 1 cut(s) 65
PvuII CAGCTG 2 cut(s) 10, 1003
RsaI GTAC 1 cut(s) 842
RsaNI GTAC 1 cut(s) 841
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 661
SaqAI TTAA 7 cut(s) 632, 743, 788, 798, 948, 1086, 1164
SatI GCNGC 5 cut(s) 8, 553, 894, 987, 1383
Sau3AI GATC 6 cut(s) 65, 625, 651, 670, 865, 1005
Sau96I GGNCC 1 cut(s) 341
SchI GAGTC 4 cut(s) 259, 923, 959, 962
ScrFI CCNGG 1 cut(s) 845
SduI GDGCHC 3 cut(s) 150, 661, 763
SfaNI GCATC 6 cut(s) 228, 279, 301, 415, 1185, 1279
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 1163
SmoI CTYRAG 1 cut(s) 1163
SpeI ACTAGT 1 cut(s) 776
Sse9I AATT 3 cut(s) 336, 936, 1089
SsiI CCGC 4 cut(s) 184, 984, 987, 1019
SspI AATATT 1 cut(s) 1211
SspMI CTAG 3 cut(s) 674, 777, 1235
SstI GAGCTC 1 cut(s) 661
StyD4I CCNGG 1 cut(s) 843
TaaI ACNGT 1 cut(s) 1408
TaiI ACGT 4 cut(s) 90, 477, 498, 1141
TaqI TCGA 4 cut(s) 201, 213, 295, 498
TaqII GACCGA 1 cut(s) 760
TasI AATT 3 cut(s) 336, 936, 1089
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 5 cut(s) 481, 620, 694, 767, 1043
Tru1I TTAA 7 cut(s) 632, 743, 788, 798, 948, 1086, 1164
Tru9I TTAA 7 cut(s) 632, 743, 788, 798, 948, 1086, 1164
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 83, 772
TseI GCWGC 4 cut(s) 7, 552, 893, 1382
Tsp45I GTSAC 2 cut(s) 83, 772
TspDTI ATGAA 8 cut(s) 203, 459, 547, 1015, 1139, 1254, 1366, 1387
TspGWI ACGGA 3 cut(s) 60, 122, 1268
TspRI CASTG 1 cut(s) 514
Vha464I CTTAAG 1 cut(s) 1163
VpaK11BI GGWCC 1 cut(s) 341
VspI ATTAAT 1 cut(s) 632
XbaI TCTAGA 1 cut(s) 1234
XceI RCATGY 1 cut(s) 403
XmnI GAANNNNTTC 3 cut(s) 570, 1245, 1304
XspI CTAG 3 cut(s) 674, 777, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.