Rmu_sc0000772.1_g000042

glycerophosphoryl diester phosphodiesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000772.1
OG0012678
Physical Location & Seq
Forward (+)
130763 .. 132464
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1233 bp
atgaagaccaagctcatcttcgggttcctaggctccaatgagatggaacccacaaccaaacaaaagtacggtgcattgttgaagaatcttggaatgatcaagtcactagcaattgggatccttgttccaaaagaattcatataccctattacctcaaataattatttggatgctcccactactctggtggcagatgctcacaaagaagggctggaagtatatgctaaaggcttcgcaaacgatcaaataatcccttacaactataatttcccacctacggcatcagaagccattggtgagacaccaggcttcttatttctagtagcacttgcatcaccatgcttttcacataacaaggatggcaagccttacaaagggagtccattgatcataagtagaaatggagcgagtgggaactatcctggttgcactgacctggcttatcagagagcagtagatgatggcgctgatataatcgattgctcggtccgaatgtcaagtgatggagttgccttctgcttgaattccgtagacctcaactcgagcaccaaagcattgactcaattcatgactgagagtgagactatccctgaacttcaacctgaaactggagtcttctcgttccagatcacatgggaggagattcagtccttaaaaccccaactgcaaagtccctatggaaccaaggaaaacatgtatagaaacccagctaacaaggatgcaggcgaagtggtgacccttaatgaattcctagggttcgccaaggaaaaggcaactggaattttggtcgacattcagagtgcgccgtacctagcatttaaggcagacattgttggtaccgtaacttctgccttgaaaaatgccacacttgacaagcaatcgactcaaaaggtcatgatcaaatcagatgacacttcagtcctgtctaaattcgctgatgagaaaacatacacaagggtgtacaacattgaggaggaaataggcattgaggaggaaataggtgctacaccaaagcaatcaattgtagagatcaagaagtttgcagatgctgtaactgtctccagaaattcgattattcagtccaccagttccttcatcttgggagaaactcacatcatcaaggaattgcaggctgcaaatctttcagtgtgcatcaattatctgaaaaacgaattcctcagtctcatgtttgattatctctctgactccattaccgaaatagctacaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0016020 GO:0031224 GO:0031225 GO:0044425 GO:0048046
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GDPD

Protein Analysis

410

Amino Acids

44.93

Weight (kDa)

4.9

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDPD PF03009 135 - 383 1.7e-17 Glycerophosphoryl diester phosphodiesterase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 917
Acc65I GGTACC 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 836
AccI GTMKAC 2 cut(s) 531, 789
AclWI GGATC 2 cut(s) 112, 125
AcsI RAATTY 7 cut(s) 134, 523, 746, 780, 929, 1066, 1172
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 4 cut(s) 68, 809, 838, 962
AfiI CCNNNNNNNGG 3 cut(s) 277, 374, 608
AflIII ACRYGT 1 cut(s) 693
AgsI TTSAA 4 cut(s) 82, 523, 599, 856
AjnI CCWGG 3 cut(s) 304, 421, 435
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 956
AluBI AGCT 3 cut(s) 13, 710, 1223
AluI AGCT 3 cut(s) 13, 710, 1223
Alw21I GWGCWC 1 cut(s) 548
Alw26I GTCTC 4 cut(s) 293, 575, 1063, 1187
AlwI GGATC 2 cut(s) 112, 125
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 1133
ApoI RAATTY 7 cut(s) 134, 523, 746, 780, 929, 1066, 1172
Asp718I GGTACC 1 cut(s) 836
AspA2I CCTAGG 2 cut(s) 28, 751
AspLEI GCGC 2 cut(s) 467, 805
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 308, 327, 745
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 487
AvrII CCTAGG 2 cut(s) 28, 751
BamHI GGATCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 836
BarI GAAGNNNNNNTAC 2 cut(s) 829, 861
BbsI GAAGAC 2 cut(s) 11, 607
Bbv12I GWGCWC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 1120
BccI CCATC 4 cut(s) 37, 353, 455, 497
BceAI ACGGC 2 cut(s) 294, 790
BciT130I CCWGG 3 cut(s) 306, 423, 437
BclI TGATCA 3 cut(s) 96, 387, 897
BcoDI GTCTC 4 cut(s) 293, 575, 1063, 1187
BfaI CTAG 5 cut(s) 29, 107, 320, 752, 812
BfoI RGCGCY 1 cut(s) 468
BisI GCNGC 1 cut(s) 1134
BlnI CCTAGG 2 cut(s) 28, 751
BlsI GCNGC 1 cut(s) 1135
Bme1390I CCNGG 3 cut(s) 306, 423, 437
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 6 cut(s) 26, 34, 48, 119, 682, 838
BmrFI CCNGG 3 cut(s) 306, 423, 437
BmsI GCATC 7 cut(s) 160, 184, 290, 341, 709, 1036, 1161
BpiI GAAGAC 2 cut(s) 11, 607
BpmI CTGGAG 2 cut(s) 630, 1045
Bsa29I ATCGAT 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 28, 684, 751, 762
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 374, 608
Bse1I ACTGG 3 cut(s) 613, 781, 1086
BseBI CCWGG 3 cut(s) 306, 423, 437
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 4 cut(s) 28, 684, 751, 762
BseGI GGATG 3 cut(s) 175, 364, 724
BseLI CCNNNNNNNGG 3 cut(s) 277, 374, 608
BseMII CTCAG 2 cut(s) 564, 1192
BseNI ACTGG 3 cut(s) 613, 781, 1086
BseRI GAGGAG 3 cut(s) 653, 986, 1004
BseXI GCAGC 1 cut(s) 1120
BseYI CCCAGC 1 cut(s) 706
BshNI GGYRCC 1 cut(s) 836
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 548
BsiHKCI CYCGRG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 3 cut(s) 277, 374, 608
BsmAI GTCTC 4 cut(s) 293, 575, 1063, 1187
BsmFI GGGAC 1 cut(s) 657
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 548
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
BspCNI CTCAG 2 cut(s) 565, 1191
BspDI ATCGAT 1 cut(s) 477
BspHI TCATGA 2 cut(s) 567, 894
BspLI GGNNCC 6 cut(s) 26, 34, 48, 119, 682, 838
BspPI GGATC 2 cut(s) 112, 125
BspT107I GGYRCC 1 cut(s) 836
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 3 cut(s) 613, 781, 1086
BssECI CCNNGG 4 cut(s) 28, 684, 751, 762
BssMI GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
BssT1I CCWWGG 4 cut(s) 28, 684, 751, 762
Bst2UI CCWGG 3 cut(s) 306, 423, 437
Bst4CI ACNGT 3 cut(s) 71, 841, 1057
BstAUI TGTACA 1 cut(s) 960
BstC8I GCNNGC 3 cut(s) 365, 724, 1131
BstDEI CTNAG 2 cut(s) 573, 1178
BstEII GGTNACC 1 cut(s) 733
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 175, 364, 724
BstH2I RGCGCY 1 cut(s) 468
BstHHI GCGC 2 cut(s) 467, 805
BstKTI GATC 7 cut(s) 99, 120, 244, 390, 630, 900, 1032
BstMAI GTCTC 4 cut(s) 293, 575, 1063, 1187
BstMBI GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 287, 821
BstNI CCWGG 3 cut(s) 306, 423, 437
BstNSI RCATGY 1 cut(s) 697
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 3 cut(s) 304, 421, 435
BstV1I GCAGC 1 cut(s) 1120
BstV2I GAAGAC 2 cut(s) 11, 607
BstX2I RGATCY 1 cut(s) 117
BstXI CCANNNNNNTGG 2 cut(s) 43, 184
BstYI RGATCY 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 477
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 3 cut(s) 175, 364, 724
BtsIMutI CAGTG 2 cut(s) 429, 1152
Cac8I GCNNGC 3 cut(s) 365, 724, 1131
CaiI CAGNNNCTG 1 cut(s) 1049
CciI TCATGA 2 cut(s) 567, 894
CfoI GCGC 2 cut(s) 467, 805
Cfr13I GGNCC 1 cut(s) 487
ClaI ATCGAT 1 cut(s) 477
CpoI CGGWCCG 1 cut(s) 487
Csp6I GTAC 4 cut(s) 67, 808, 837, 961
CspI CGGWCCG 1 cut(s) 487
CviAII CATG 6 cut(s) 339, 568, 633, 694, 895, 1186
CviQI GTAC 4 cut(s) 67, 808, 837, 961
DdeI CTNAG 2 cut(s) 573, 1178
DpnI GATC 7 cut(s) 98, 119, 243, 389, 629, 899, 1031
DpnII GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
DrdI GACNNNNNNGTC 1 cut(s) 917
DseDI GACNNNNNNGTC 1 cut(s) 917
Eco130I CCWWGG 4 cut(s) 28, 684, 751, 762
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 900
Eco88I CYCGRG 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 733
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoO65I GGTNACC 1 cut(s) 733
EcoRI GAATTC 4 cut(s) 134, 523, 746, 1172
EcoRII CCWGG 3 cut(s) 304, 421, 435
EcoT14I CCWWGG 4 cut(s) 28, 684, 751, 762
ErhI CCWWGG 4 cut(s) 28, 684, 751, 762
FaeI CATG 6 cut(s) 342, 571, 636, 697, 898, 1189
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 657
FatI CATG 6 cut(s) 338, 567, 632, 693, 894, 1185
FbaI TGATCA 3 cut(s) 96, 387, 897
FblI GTMKAC 2 cut(s) 531, 789
Fnu4HI GCNGC 1 cut(s) 1134
FokI GGATG 3 cut(s) 182, 371, 731
Fsp4HI GCNGC 1 cut(s) 1134
FspBI CTAG 5 cut(s) 29, 107, 320, 752, 812
GlaI GCGC 2 cut(s) 466, 804
GluI GCNGC 1 cut(s) 1134
GsaI CCCAGC 1 cut(s) 710
GsuI CTGGAG 2 cut(s) 630, 1045
HaeII RGCGCY 1 cut(s) 468
HhaI GCGC 2 cut(s) 467, 805
Hin1II CATG 6 cut(s) 342, 571, 636, 697, 898, 1189
Hin6I GCGC 2 cut(s) 465, 803
HinP1I GCGC 2 cut(s) 465, 803
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 7 cut(s) 85, 379, 559, 612, 643, 883, 1205
HphI GGTGA 3 cut(s) 308, 327, 745
Hpy166II GTNNAC 4 cut(s) 532, 790, 961, 1083
Hpy188I TCNGA 7 cut(s) 286, 447, 491, 798, 907, 1164, 1204
Hpy188III TCNNGA 5 cut(s) 568, 625, 895, 1033, 1062
Hpy8I GTNNAC 4 cut(s) 532, 790, 961, 1083
HpyAV CCTTC 3 cut(s) 200, 523, 1102
HpyCH4III ACNGT 3 cut(s) 71, 841, 1057
HpyCH4V TGCA 9 cut(s) 74, 332, 429, 667, 722, 1043, 1129, 1136, 1152
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 821
HpyF3I CTNAG 2 cut(s) 573, 1178
Hsp92II CATG 6 cut(s) 342, 571, 636, 697, 898, 1189
HspAI GCGC 2 cut(s) 465, 803
KpnI GGTACC 1 cut(s) 840
Ksp22I TGATCA 3 cut(s) 96, 387, 897
Kzo9I GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
LmnI GCTCC 3 cut(s) 38, 178, 404
Lsp1109I GCAGC 1 cut(s) 1120
LweI GCATC 7 cut(s) 160, 184, 290, 341, 709, 1036, 1161
MaeI CTAG 5 cut(s) 29, 107, 320, 752, 812
MaeIII GTNAC 4 cut(s) 102, 733, 841, 1051
MalI GATC 7 cut(s) 98, 119, 243, 389, 629, 899, 1031
MboI GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
MboII GAAGA 4 cut(s) 10, 16, 94, 607
MfeI CAATTG 2 cut(s) 111, 1020
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 548
MlyI GAGTC 5 cut(s) 388, 553, 621, 877, 1199
MnlI CCTC 8 cut(s) 163, 545, 631, 964, 967, 982, 985, 1187
MseI TTAA 3 cut(s) 653, 741, 819
MslI CAYNNNNRTG 2 cut(s) 337, 956
MspR9I CCNGG 3 cut(s) 306, 423, 437
MunI CAATTG 2 cut(s) 111, 1020
MvaI CCWGG 3 cut(s) 306, 423, 437
MwoI GCNNNNNNNGC 2 cut(s) 287, 821
NdeII GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
NlaIII CATG 6 cut(s) 342, 571, 636, 697, 898, 1189
NlaIV GGNNCC 6 cut(s) 26, 34, 48, 119, 682, 838
NmuCI GTSAC 2 cut(s) 102, 733
NspI RCATGY 1 cut(s) 697
OliI CACNNNNGTG 1 cut(s) 956
PaeR7I CTCGAG 1 cut(s) 541
PagI TCATGA 2 cut(s) 567, 894
PciI ACATGT 1 cut(s) 693
PfeI GAWTC 2 cut(s) 85, 643
PkrI GCNGC 1 cut(s) 1135
PleI GAGTC 5 cut(s) 387, 553, 620, 877, 1199
PpsI GAGTC 5 cut(s) 387, 553, 620, 877, 1199
PscI ACATGT 1 cut(s) 693
Psp6I CCWGG 3 cut(s) 304, 421, 435
PspEI GGTNACC 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 3 cut(s) 304, 421, 435
PspN4I GGNNCC 6 cut(s) 26, 34, 48, 119, 682, 838
PspPI GGNCC 1 cut(s) 487
PspXI VCTCGAGB 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 4 cut(s) 68, 809, 838, 962
RsaNI GTAC 4 cut(s) 67, 808, 837, 961
RseI CAYNNNNRTG 2 cut(s) 337, 956
Rsr2I CGGWCCG 1 cut(s) 487
RsrII CGGWCCG 1 cut(s) 487
SalI GTCGAC 1 cut(s) 788
SaqAI TTAA 3 cut(s) 653, 741, 819
SatI GCNGC 1 cut(s) 1134
Sau3AI GATC 7 cut(s) 96, 117, 241, 387, 627, 897, 1029
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 5 cut(s) 388, 553, 621, 877, 1199
ScrFI CCNGG 3 cut(s) 306, 423, 437
SduI GDGCHC 1 cut(s) 548
SfaNI GCATC 7 cut(s) 160, 184, 290, 341, 709, 1036, 1161
Sfr274I CTCGAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 487
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 337, 956
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
SspMI CTAG 5 cut(s) 29, 107, 320, 752, 812
StyD4I CCNGG 3 cut(s) 304, 421, 435
StyI CCWWGG 4 cut(s) 28, 684, 751, 762
TaaI ACNGT 3 cut(s) 71, 841, 1057
TaqI TCGA 5 cut(s) 477, 542, 789, 881, 1070
TaqII GACCGA 1 cut(s) 475
TatI WGTACW 1 cut(s) 960
TfiI GAWTC 2 cut(s) 85, 643
Tru1I TTAA 3 cut(s) 653, 741, 819
Tru9I TTAA 3 cut(s) 653, 741, 819
TscAI CASTG 2 cut(s) 436, 1152
TseFI GTSAC 2 cut(s) 102, 733
TseI GCWGC 1 cut(s) 1133
Tsp45I GTSAC 2 cut(s) 102, 733
TspDTI ATGAA 5 cut(s) 17, 127, 556, 759, 1084
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 2 cut(s) 436, 1152
VpaK11BI GGWCC 1 cut(s) 487
XagI CCTNNNNNAGG 1 cut(s) 372
XapI RAATTY 7 cut(s) 134, 523, 746, 780, 929, 1066, 1172
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 541
XmaJI CCTAGG 2 cut(s) 28, 751
XmiI GTMKAC 2 cut(s) 531, 789
XspI CTAG 5 cut(s) 29, 107, 320, 752, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.