Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0014850

Physical Location & Seq

Genomic Coordinates Reverse (-)

196510 .. 200273

Gene Structure 3764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggacaatctgagatcgggaagacgtcggcgtcaaggattcgaagctaacgccggtgttccgcctccggtagatggcctgactgtgagaatacgaccgggtctcgccctcagccctcgggtaagggtcgcaataccgggcgaaggtccatactccgtggaggtcggcacgaagaataagccgctgccgaagccaaaatggatggagtcgatctcggcaggcgagaagtacatgcagattaagaagaagctcagggaattgaagctccacacagtctccgaggaggccaagtgtcccaatctcggtgagttttgtaatgcgaagacttcgaggactcctccgctgctggacctcaatgagctggcgaatgtggaggaggcgattgtgtcgtgggggttggattatgtggtgattacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006464 GO:0006520 GO:0006544 GO:0006546 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009106 GO:0009107 GO:0009108 GO:0009249 GO:0009987 GO:0010467 GO:0016053 GO:0016054 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0017144 GO:0018065 GO:0018130 GO:0018193 GO:0018205 GO:0019538 GO:0019752 GO:0031974 GO:0032787 GO:0036211 GO:0042133 GO:0042135 GO:0042737 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044272 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0046483 GO:0051186 GO:0051188 GO:0051604 GO:0065007 GO:0065008 GO:0070013 GO:0070283 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

LIAS_N Radical_SAM

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

9.51

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIAS_N	PF16881	62 - 98	2.3e-08	N-terminal domain of lipoyl synthase of Radical_SAM family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014850)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0401871
rosa_laevigata	RLG00000017660 RLG00000024316
rosa_multiflora	Rmu_sc0000381.1_g000015 Rmu_sc0000776.1_g000039 Rmu_sc0002389.1_g000021 Rmu_sc0011728.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345570
rosa_rugosa	Rorug04G0123400
rosa_samantha	Rh1AG041200 Rh2BG525600 Rh4AG110500 Rh4AG261900 Rh4BG268000 Rh4CG126000 Rh5AG232800 Rh6CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AatII	GACGTC	1 cut(s)	28
AciI	CCGC	3 cut(s)	62, 182, 341
AcyI	GRCGYC	2 cut(s)	25, 31
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	4 cut(s)	47, 250, 265, 361
AluI	AGCT	4 cut(s)	47, 250, 265, 361
Alw26I	GTCTC	2 cut(s)	107, 280
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	2 cut(s)	76, 285
ApeKI	GCWGC	2 cut(s)	184, 343
AspS9I	GGNCC	2 cut(s)	146, 349
AsuC2I	CCSGG	2 cut(s)	99, 138
AsuHPI	GGTGA	1 cut(s)	317
AsuII	TTCGAA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	146, 349
BbsI	GAAGAC	2 cut(s)	28, 329
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	171, 330
BccI	CCATC	2 cut(s)	68, 196
BcnI	CCSGG	2 cut(s)	99, 138
BcoDI	GTCTC	2 cut(s)	107, 280
BisI	GCNGC	3 cut(s)	182, 185, 344
BlsI	GCNGC	3 cut(s)	183, 186, 345
Bme1390I	CCNGG	2 cut(s)	99, 138
Bme18I	GGWCC	2 cut(s)	146, 349
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	146, 349
BmrFI	CCNGG	2 cut(s)	99, 138
BpiI	GAAGAC	2 cut(s)	28, 329
BplI	GAGNNNNNCTC	4 cut(s)	197, 229, 322, 354
Bpu10I	CCTNAGC	2 cut(s)	110, 251
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	99, 138
BsaHI	GRCGYC	2 cut(s)	25, 31
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	116, 156, 279
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 275, 290, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 143, 302
Bse118I	RCCGGY	1 cut(s)	53
BseDI	CCNNGG	3 cut(s)	116, 156, 279
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
BseMII	CTCAG	2 cut(s)	124, 265
BseRI	GAGGAG	3 cut(s)	296, 327, 389
BseXI	GCAGC	2 cut(s)	171, 330
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	78, 287
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	54, 68, 98, 137
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	74, 143, 302
BsmAI	GTCTC	2 cut(s)	107, 280
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	78, 287
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	14, 210
BspACI	CCGC	3 cut(s)	62, 182, 341
BspANI	GGCC	2 cut(s)	78, 287
BspCNI	CTCAG	2 cut(s)	123, 264
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	116, 156, 279
BssMI	GATC	2 cut(s)	14, 210
BssNI	GRCGYC	2 cut(s)	25, 31
Bst4CI	ACNGT	2 cut(s)	85, 274
BstACI	GRCGYC	2 cut(s)	25, 31
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	220, 363
BstDEI	CTNAG	3 cut(s)	11, 110, 251
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	17, 213
BstMAI	GTCTC	2 cut(s)	107, 280
BstMBI	GATC	2 cut(s)	14, 210
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	97, 136
BstV1I	GCAGC	2 cut(s)	171, 330
BstV2I	GAAGAC	2 cut(s)	28, 329
BsuRI	GGCC	2 cut(s)	78, 287
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	220, 363
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	146, 349
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	47, 78, 114, 181, 193, 250, 265, 287, 361
CviKI_1	RGCY	9 cut(s)	47, 78, 114, 181, 193, 250, 265, 287, 361
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	11, 110, 251
DpnI	GATC	2 cut(s)	16, 212
DpnII	GATC	2 cut(s)	14, 210
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	146, 349
Eco88I	CYCGRG	1 cut(s)	117
FaeI	CATG	1 cut(s)	235
FaiI	YATR	3 cut(s)	151, 233, 405
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	182, 185, 344
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	182, 185, 344
GluI	GCNGC	3 cut(s)	182, 185, 344
HaeIII	GGCC	2 cut(s)	78, 287
HapII	CCGG	4 cut(s)	54, 68, 98, 137
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	2 cut(s)	25, 31
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	39, 206, 334
HpaII	CCGG	4 cut(s)	54, 68, 98, 137
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	2 cut(s)	12, 280
Hpy188III	TCNNGA	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	85, 274
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	11, 110, 251
HpySE526I	ACGT	1 cut(s)	25
Hsp92I	GRCGYC	2 cut(s)	25, 31
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	14, 210
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	67, 81, 92, 111, 150, 204, 238, 332, 347
Lsp1109I	GCAGC	2 cut(s)	171, 330
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	16, 212
MboI	GATC	2 cut(s)	14, 210
MboII	GAAGA	4 cut(s)	33, 184, 256, 334
MluCI	AATT	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	215, 328
MmeI	TCCRAC	1 cut(s)	378
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	184, 343
MspI	CCGG	4 cut(s)	54, 68, 98, 137
MspR9I	CCNGG	2 cut(s)	99, 138
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	99, 138
NdeII	GATC	2 cut(s)	14, 210
NlaIII	CATG	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	194
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	183, 186, 345
PleI	GAGTC	2 cut(s)	214, 328
PpsI	GAGTC	2 cut(s)	214, 328
PspPI	GGNCC	2 cut(s)	146, 349
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	182, 185, 344
Sau3AI	GATC	2 cut(s)	14, 210
Sau96I	GGNCC	2 cut(s)	146, 349
SchI	GAGTC	2 cut(s)	215, 328
ScrFI	CCNGG	2 cut(s)	99, 138
SetI	ASST	8 cut(s)	28, 49, 148, 165, 252, 267, 354, 363
SfuI	TTCGAA	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	2 cut(s)	146, 349
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	3 cut(s)	62, 182, 341
StyD4I	CCNGG	2 cut(s)	97, 136
TaaI	ACNGT	2 cut(s)	85, 274
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	3 cut(s)	42, 209, 329
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	184, 343
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	146, 349
XceI	RCATGY	1 cut(s)	235
ZraI	GACGTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.