Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000829.1

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

126500 .. 129102

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggcctccaagcgcatcttgaaggagcttaaggatttgcagaaggatcctcccacttcctgcagcgccgaagcatttattaataaagcttcattcctggttagcagcagtcagcatgaagtattgaatttgcagtataaggtttgttatgcaaggattttagatttgaagaggaagttcttggaagcagcattacgttattatgacatttctcagattgagaagaggcaaataggagatgaagagattgatgaggatgccttggagcaagccttatctgctgcagttacatgcacaattttggccgctgcaggaccacaacgttcccgtgttcttgccactttgtacaaagatgagcgatgctcaaaactgaaagtttatccaatacttcaaaaggtttatttggagagaattttgaggaaaccagaaattgatgcatttgctgaagagttgaagtcgcatcagaaagcacttctgccagacaattttacggtgttagatcgtgcaatgattgaacataatcttctcagtgccagcaaactttacaccaatataagttttgatgagttgggaaccttgctgggaattgagcctccaaaggctgagaagattgcttcaagaatgatatatgaggacagaatgaggggatctattgatcaggtggaagctgtcatacattttgaagatgatactgaagagctgcaacaatgggatcagcagattgttggcttatgtcaggcgctcaatgacgtcttggatagcatggcaaagaaaggcttggcaattcctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

264

Amino Acids

29.96

Weight (kDa)

5.32

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	153 - 229	1.4e-18	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	753
AciI	CCGC	1 cut(s)	306
AclI	AACGTT	1 cut(s)	322
AclWI	GGATC	4 cut(s)	41, 54, 655, 720
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	127, 411
AcuI	CTGAAG	2 cut(s)	465, 714
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	8 cut(s)	22, 127, 169, 392, 454, 515, 618, 683
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	28, 89, 668, 700
AluI	AGCT	4 cut(s)	28, 89, 668, 700
AlwI	GGATC	4 cut(s)	41, 54, 655, 720
AoxI	GGCC	2 cut(s)	3, 303
ApeKI	GCWGC	6 cut(s)	63, 105, 188, 281, 308, 700
ApoI	RAATTY	2 cut(s)	127, 411
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	3 cut(s)	15, 68, 742
AspS9I	GGNCC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	4 cut(s)	177, 209, 657, 689
BbvI	GCAGC	6 cut(s)	75, 117, 200, 268, 295, 687
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	655
BfmI	CTRYAG	3 cut(s)	61, 282, 309
BfoI	RGCGCY	2 cut(s)	69, 743
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	7 cut(s)	64, 106, 189, 282, 306, 309, 701
BlsI	GCNGC	7 cut(s)	65, 107, 190, 283, 307, 310, 702
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	48, 574
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	5 cut(s)	24, 247, 350, 424, 469
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	3 cut(s)	227, 541, 594
BseXI	GCAGC	6 cut(s)	75, 117, 200, 268, 295, 687
BseYI	CCCAGC	1 cut(s)	580
BshFI	GGCC	2 cut(s)	5, 305
BsnI	GGCC	2 cut(s)	5, 305
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	46, 499, 647, 655, 712
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	5, 305
BspCNI	CTCAG	3 cut(s)	226, 540, 595
BspLI	GGNNCC	2 cut(s)	48, 574
BspMAI	CTGCAG	3 cut(s)	65, 286, 313
BspPI	GGATC	4 cut(s)	41, 54, 655, 720
BspQI	GCTCTTC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	513
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	5 cut(s)	46, 499, 647, 655, 712
BssNI	GRCGYC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	5 cut(s)	164, 218, 237, 441, 690
BstACI	GRCGYC	1 cut(s)	750
BstAFI	CTTAAG	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	270, 535
BstDEI	CTNAG	3 cut(s)	213, 527, 603
BstF5I	GGATG	1 cut(s)	262
BstH2I	RGCGCY	2 cut(s)	69, 743
BstHHI	GCGC	3 cut(s)	15, 68, 742
BstKTI	GATC	5 cut(s)	49, 502, 650, 658, 715
BstMBI	GATC	5 cut(s)	46, 499, 647, 655, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	3 cut(s)	61, 282, 309
BstV1I	GCAGC	6 cut(s)	75, 117, 200, 268, 295, 687
BstX2I	RGATCY	2 cut(s)	46, 647
BstYI	RGATCY	2 cut(s)	46, 647
BsuRI	GGCC	2 cut(s)	5, 305
BtgZI	GCGATG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	270, 535
CfoI	GCGC	3 cut(s)	15, 68, 742
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	116, 291, 763
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	213, 527, 603
DpnI	GATC	5 cut(s)	48, 501, 649, 657, 714
DpnII	GATC	5 cut(s)	46, 499, 647, 655, 712
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	5 cut(s)	164, 218, 237, 441, 690
EarI	CTCTTC	5 cut(s)	164, 218, 237, 441, 690
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	465, 714
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	119, 294, 766
FalI	AAGNNNNNCTT	3 cut(s)	34, 761, 793
FatI	CATG	3 cut(s)	115, 290, 762
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	7 cut(s)	64, 106, 189, 282, 306, 309, 701
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	7 cut(s)	64, 106, 189, 282, 306, 309, 701
GlaI	GCGC	3 cut(s)	14, 67, 741
GluI	GCNGC	7 cut(s)	64, 106, 189, 282, 306, 309, 701
GsaI	CCCAGC	1 cut(s)	584
HaeII	RGCGCY	2 cut(s)	69, 743
HaeIII	GGCC	2 cut(s)	5, 305
HhaI	GCGC	3 cut(s)	15, 68, 742
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	119, 294, 766
Hin6I	GCGC	3 cut(s)	13, 66, 740
HinP1I	GCGC	3 cut(s)	13, 66, 740
HindIII	AAGCTT	1 cut(s)	87
Hpy188I	TCNGA	3 cut(s)	216, 465, 794
Hpy188III	TCNNGA	2 cut(s)	19, 618
HpyAV	CCTTC	2 cut(s)	16, 37
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	3 cut(s)	196, 322, 750
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	213, 527, 603
HpySE526I	ACGT	3 cut(s)	196, 322, 750
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	3 cut(s)	119, 294, 766
HspAI	GCGC	3 cut(s)	13, 66, 740
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	5 cut(s)	46, 499, 647, 655, 712
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	2 cut(s)	25, 265
Lsp1109I	GCAGC	6 cut(s)	75, 117, 200, 268, 295, 687
LweI	GCATC	5 cut(s)	24, 247, 350, 424, 469
MaeII	ACGT	3 cut(s)	196, 322, 750
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	5 cut(s)	48, 501, 649, 657, 714
MboI	GATC	5 cut(s)	46, 499, 647, 655, 712
MboII	GAAGA	8 cut(s)	181, 235, 254, 458, 515, 619, 695, 707
MflI	RGATCY	2 cut(s)	46, 647
MluCI	AATT	7 cut(s)	127, 297, 411, 429, 484, 585, 783
MnlI	CCTC	9 cut(s)	16, 60, 165, 219, 247, 411, 603, 625, 636
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	2 cut(s)	30, 81
MspA1I	CMGCKG	1 cut(s)	308
MspCI	CTTAAG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	5 cut(s)	46, 499, 647, 655, 712
NlaIII	CATG	3 cut(s)	119, 294, 766
NlaIV	GGNNCC	2 cut(s)	48, 574
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	690
PkrI	GCNGC	7 cut(s)	65, 107, 190, 283, 307, 310, 702
PshBI	ATTAAT	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	48, 574
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	3 cut(s)	65, 286, 313
PsuI	RGATCY	2 cut(s)	46, 647
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	30, 81
SatI	GCNGC	7 cut(s)	64, 106, 189, 282, 306, 309, 701
Sau3AI	GATC	5 cut(s)	46, 499, 647, 655, 712
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	5 cut(s)	24, 247, 350, 424, 469
SfcI	CTRYAG	3 cut(s)	61, 282, 309
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	7 cut(s)	127, 297, 411, 429, 484, 585, 783
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	3 cut(s)	199, 325, 753
TasI	AATT	7 cut(s)	127, 297, 411, 429, 484, 585, 783
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	30, 81
Tru9I	TTAA	2 cut(s)	30, 81
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	6 cut(s)	63, 105, 188, 281, 308, 700
TspDTI	ATGAA	3 cut(s)	81, 132, 255
TspRI	CASTG	1 cut(s)	535
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	2 cut(s)	127, 411
XceI	RCATGY	1 cut(s)	294
ZraI	GACGTC	1 cut(s)	751
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.