Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000942.1

Orthogroup ID

OG0012703

Physical Location & Seq

Genomic Coordinates Forward (+)

42818 .. 43276

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatggatagcgctagaagagcgctttggcaatgtccaagattccctcatccctgacttgaaggatcaatggaacaacctgcgctttgctgatttcaagtctgttgctgaatataattcagaagttcttcgcatacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccaccttccccatttcagccattgtggtatcaaagcaataccgtactgaagtcaatgttggacggatcacgaggcttcatcagcttatcaatgttatatatgtagctgagaaacatgataacatactcgtgaggaattataattcaaggcccattggaactaagagcgtaaggagggcgcaaggagcggtaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

152

Amino Acids

17.75

Weight (kDa)

9.67

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	3 - 93	2e-06	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012703)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Species

Orthologous Gene IDs

rosa_multiflora

Rmu_co8294339.1_g000001 Rmu_sc0000663.1_g000027 Rmu_sc0000837.1_g000082 Rmu_sc0000942.1_g000008 Rmu_sc0001696.1_g000021 Rmu_sc0001900.1_g000041 Rmu_sc0002989.1_g000014 Rmu_sc0003919.1_g000024 Rmu_sc0004542.1_g000005 Rmu_sc0005023.1_g000006 Rmu_sc0007631.1_g000001 Rmu_sc0008230.1_g000001 Rmu_sc0008240.1_g000008 Rmu_sc0008496.1_g000014 Rmu_sc0018059.1_g000004 Rmu_sc0025674.1_g000001 Rmu_sc0026498.1_g000002 Rmu_sc0031747.1_g000001 Rmu_sc0034880.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	150
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AccBSI	CCGCTC	1 cut(s)	449
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	2 cut(s)	135, 335
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	2 cut(s)	307, 453
AfeI	AGCGCT	2 cut(s)	75, 86
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	124, 160, 408
AhdI	GACNNNNNGTC	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	4 cut(s)	72, 104, 303, 335
AluBI	AGCT	4 cut(s)	64, 244, 346, 368
AluI	AGCT	4 cut(s)	64, 244, 346, 368
AlwI	GGATC	2 cut(s)	135, 335
Aor51HI	AGCGCT	2 cut(s)	75, 86
AoxI	GGCC	1 cut(s)	410
Asp700I	GAANNNNTTC	1 cut(s)	189
Asp718I	GGTACC	1 cut(s)	451
AspLEI	GCGC	4 cut(s)	76, 87, 147, 442
AspS9I	GGNCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	451
BauI	CACGAG	2 cut(s)	331, 389
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	2 cut(s)	77, 88
BfuAI	ACCTGC	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	40, 360
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	45, 127, 327
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	39, 361
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	135, 335
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	100
BssMI	GATC	3 cut(s)	45, 127, 327
BssNI	GRCGYC	1 cut(s)	7
BssSI	CACGAG	2 cut(s)	331, 389
Bst2BI	CACGAG	2 cut(s)	331, 389
Bst4CI	ACNGT	2 cut(s)	201, 305
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	26, 369, 423
BstF5I	GGATG	1 cut(s)	111
BstH2I	RGCGCY	2 cut(s)	77, 88
BstHHI	GCGC	4 cut(s)	76, 87, 147, 442
BstKTI	GATC	3 cut(s)	48, 130, 330
BstMBI	GATC	3 cut(s)	45, 127, 327
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 343, 446
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	150
CfoI	GCGC	4 cut(s)	76, 87, 147, 442
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	306, 452
CviAII	CATG	2 cut(s)	205, 377
CviJI	RGCY	7 cut(s)	64, 244, 281, 337, 346, 368, 412
CviKI_1	RGCY	7 cut(s)	64, 244, 281, 337, 346, 368, 412
CviQI	GTAC	2 cut(s)	306, 452
DdeI	CTNAG	3 cut(s)	26, 369, 423
DpnI	GATC	3 cut(s)	47, 129, 329
DpnII	GATC	3 cut(s)	45, 127, 327
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	75
Eam1105I	GACNNNNNGTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	75
Eco47III	AGCGCT	2 cut(s)	75, 86
Eco57I	CTGAAG	1 cut(s)	330
FaeI	CATG	2 cut(s)	208, 380
FatI	CATG	2 cut(s)	204, 376
FauNDI	CATATG	1 cut(s)	12
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	4 cut(s)	75, 86, 146, 441
HaeII	RGCGCY	2 cut(s)	77, 88
HaeIII	GGCC	1 cut(s)	412
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	4 cut(s)	76, 87, 147, 442
Hin1I	GRCGYC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	208, 380
Hin6I	GCGC	4 cut(s)	74, 85, 145, 440
HinP1I	GCGC	4 cut(s)	74, 85, 145, 440
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	2 cut(s)	29, 184
Hpy188III	TCNNGA	3 cut(s)	49, 331, 391
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	2 cut(s)	118, 277
HpyCH4III	ACNGT	2 cut(s)	201, 305
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 343, 446
HpyF3I	CTNAG	3 cut(s)	26, 369, 423
Hsp92I	GRCGYC	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	208, 380
HspAI	GCGC	4 cut(s)	74, 85, 145, 440
KpnI	GGTACC	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	45, 127, 327
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	3 cut(s)	129, 155, 240
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	47, 129, 329
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	3 cut(s)	45, 127, 327
MboII	GAAGA	2 cut(s)	92, 182
MluCI	AATT	4 cut(s)	178, 246, 397, 403
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	119, 204, 327, 387, 429
MroXI	GAANNNNTTC	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	82, 343, 446
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	3 cut(s)	45, 127, 327
NlaIII	CATG	2 cut(s)	208, 380
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	411
RsaI	GTAC	2 cut(s)	307, 453
RsaNI	GTAC	2 cut(s)	306, 452
RseI	CAYNNNNRTG	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	45, 127, 327
Sau96I	GGNCC	1 cut(s)	411
SetI	ASST	8 cut(s)	66, 144, 215, 229, 246, 269, 348, 370
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	178, 246, 397, 403
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	201, 305
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	178, 246, 397, 403
TfiI	GAWTC	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.