Rmu_sc0001089.1_g000031

Dymeclin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001089.1
OG0014671
Physical Location & Seq
Reverse (-)
122556 .. 127041
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1092 bp
atgagaacctggatgctcttcgagttctctgcttcgattgaacctgagattacactgatttatgagaaagtgaaaggcttttgcaggaactgtggattgtttgaacacgatgctacgggctatgatggtttcctggtgaaagaaaaggagaagctgcatcgcatggctccggcggcagcattggctagtttgtcgttcgatgtcggtcaaccaaagttggattccactacaccgagcggcctaacggagaaatttgaaattttgttagacctagcttttacaaagtcactaaacgccctagtcgaagccaaatctcatctcccgccaccaaaagctctcaccctagtcgacggtgaccttcataatgttcgacggggtcggagcttccctcccgccatcaactcgtctccaggtaccaatcgctcttcattctcagttttcaatttcaaattctctcaaaagctcagatctctctctctctctctctctctcactcgcagcgtttctcagctcagctcagcttctctgtctttggttcccaagaagagcagctcccttcgattcctgcaatgcttctccgattctgattacagcaatgtctcaagtggtgaaggctcaagaagtcttttggctgactgcagtctccatgtgctacttatcttcactcattatcataaatgtgttgtgggcaacgagccaataacagataaaagtaatgacaccactacttcaaattcgcttttgaaagggagtagatatttttctgacaacccttactgcatggccttggaacatgcaacggatgttgaatttgattgtgtagatactgagggtaatgcacatagtggtccagttttgaggttaccctttgcttctctgttcgatacccttggaatgtacttgactgatgaggctgctgcacttttgctttctctttattgcaaggaaatgctgactttctggagtatgtcttggtgcaaactgatttggatacactgcttgaatgacactgactttgctgaattggaagaacttgagatggaggaaggaatggaggggctgtcttcacctcctctgcccaatgctatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dymeclin

Protein Analysis

363

Amino Acids

40.18

Weight (kDa)

5.33

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 174 - 323 1e-10 Dyggve-Melchior-Clausen syndrome protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 413
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 348
AciI CCGC 4 cut(s) 173, 237, 323, 393
AcsI RAATTY 5 cut(s) 251, 258, 449, 733, 809
AdeI CACNNNGTG 1 cut(s) 845
AfaI GTAC 2 cut(s) 415, 899
AgsI TTSAA 9 cut(s) 41, 104, 257, 442, 448, 732, 745, 809, 1003
AjnI CCWGG 3 cut(s) 8, 132, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 9 cut(s) 154, 275, 335, 384, 463, 511, 516, 521, 552
AluI AGCT 9 cut(s) 154, 275, 335, 384, 463, 511, 516, 521, 552
Alw26I GTCTC 3 cut(s) 411, 604, 647
AlwNI CAGNNNCTG 1 cut(s) 90
AoxI GGCC 2 cut(s) 238, 783
ApeKI GCWGC 6 cut(s) 154, 176, 498, 549, 914, 917
ApoI RAATTY 5 cut(s) 251, 258, 449, 733, 809
ArsI GACNNNNNNTTYG 2 cut(s) 998, 1030
Asp718I GGTACC 1 cut(s) 413
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 5 cut(s) 148, 331, 365, 620, 1059
AvaII GGWCC 1 cut(s) 848
BanI GGYRCC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 1056
BbvI GCAGC 6 cut(s) 141, 188, 510, 561, 901, 904
BccI CCATC 3 cut(s) 119, 404, 1033
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 10, 134, 411
BciVI GTATCC 1 cut(s) 984
BcoDI GTCTC 3 cut(s) 411, 604, 647
BfaI CTAG 4 cut(s) 186, 272, 299, 344
BfmI CTRYAG 1 cut(s) 637
BfuI GTATCC 1 cut(s) 984
BglII AGATCT 1 cut(s) 467
BisI GCNGC 8 cut(s) 155, 174, 177, 238, 499, 550, 915, 918
BlpI GCTNAGC 2 cut(s) 512, 517
BlsI GCNGC 8 cut(s) 156, 175, 178, 239, 500, 551, 916, 919
Bme1390I CCNGG 3 cut(s) 10, 134, 411
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 3 cut(s) 168, 415, 537
BmrFI CCNGG 3 cut(s) 10, 134, 411
BmsI GCATC 3 cut(s) 3, 100, 166
BoxI GACNNNNGTC 1 cut(s) 639
BpiI GAAGAC 1 cut(s) 1056
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpmI CTGGAG 2 cut(s) 393, 982
Bpu1102I GCTNAGC 2 cut(s) 512, 517
BpuEI CTTGAG 3 cut(s) 586, 601, 1055
BsaJI CCNNGG 2 cut(s) 786, 889
BsaXI ACNNNNNCTCC 2 cut(s) 1046, 1076
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 2 cut(s) 575, 601
BseBI CCWGG 3 cut(s) 10, 134, 411
BseDI CCNNGG 2 cut(s) 786, 889
BseGI GGATG 2 cut(s) 18, 808
BseMI GCAATG 2 cut(s) 575, 601
BseMII CTCAG 7 cut(s) 36, 447, 478, 521, 526, 531, 819
BseNI ACTGG 1 cut(s) 851
BseRI GAGGAG 1 cut(s) 1062
BseXI GCAGC 6 cut(s) 141, 188, 510, 561, 901, 904
BsgI GTGCAG 1 cut(s) 903
BshFI GGCC 2 cut(s) 240, 785
BshNI GGYRCC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 170
BsmAI GTCTC 3 cut(s) 411, 604, 647
BsmBI CGTCTC 1 cut(s) 411
BsnI GGCC 2 cut(s) 240, 785
Bsp143I GATC 1 cut(s) 467
Bsp1720I GCTNAGC 2 cut(s) 512, 517
BspACI CCGC 4 cut(s) 173, 237, 323, 393
BspANI GGCC 2 cut(s) 240, 785
BspCNI CTCAG 7 cut(s) 37, 446, 477, 520, 525, 530, 820
BspLI GGNNCC 3 cut(s) 168, 415, 537
BspMAI CTGCAG 1 cut(s) 641
BspQI GCTCTTC 3 cut(s) 23, 430, 539
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 237
BsrDI GCAATG 2 cut(s) 575, 601
BsrI ACTGG 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 786, 889
BssMI GATC 1 cut(s) 467
BssT1I CCWWGG 2 cut(s) 786, 889
Bst2UI CCWGG 3 cut(s) 10, 134, 411
Bst4CI ACNGT 2 cut(s) 92, 353
Bst6I CTCTTC 3 cut(s) 23, 430, 539
BstDEI CTNAG 7 cut(s) 45, 433, 464, 507, 512, 517, 828
BstEII GGTNACC 2 cut(s) 353, 861
BstF5I GGATG 2 cut(s) 18, 808
BstKTI GATC 1 cut(s) 470
BstMAI GTCTC 3 cut(s) 411, 604, 647
BstMBI GATC 1 cut(s) 467
BstMWI GCNNNNNNNGC 2 cut(s) 173, 182
BstNI CCWGG 3 cut(s) 10, 134, 411
BstNSI RCATGY 1 cut(s) 797
BstPAI GACNNNNGTC 1 cut(s) 639
BstPI GGTNACC 2 cut(s) 353, 861
BstSCI CCNGG 3 cut(s) 8, 132, 409
BstSFI CTRYAG 1 cut(s) 637
BstV1I GCAGC 6 cut(s) 141, 188, 510, 561, 901, 904
BstV2I GAAGAC 1 cut(s) 1056
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuI GTATCC 1 cut(s) 984
BsuRI GGCC 2 cut(s) 240, 785
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 18, 808
BtsI GCAGTG 1 cut(s) 994
BtsIMutI CAGTG 3 cut(s) 53, 994, 1008
CaiI CAGNNNCTG 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 848
Csp6I GTAC 2 cut(s) 414, 898
CviAII CATG 4 cut(s) 163, 647, 781, 794
CviQI GTAC 2 cut(s) 414, 898
DdeI CTNAG 7 cut(s) 45, 433, 464, 507, 512, 517, 828
DpnI GATC 1 cut(s) 469
DpnII GATC 1 cut(s) 467
DraIII CACNNNGTG 1 cut(s) 845
Eam1104I CTCTTC 3 cut(s) 23, 430, 539
EarI CTCTTC 3 cut(s) 23, 430, 539
Eco130I CCWWGG 2 cut(s) 786, 889
Eco47I GGWCC 1 cut(s) 848
Eco91I GGTNACC 2 cut(s) 353, 861
EcoO65I GGTNACC 2 cut(s) 353, 861
EcoRII CCWGG 3 cut(s) 8, 132, 409
EcoT14I CCWWGG 2 cut(s) 786, 889
ErhI CCWWGG 2 cut(s) 786, 889
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 4 cut(s) 166, 650, 784, 797
FatI CATG 4 cut(s) 162, 646, 780, 793
FauI CCCGC 2 cut(s) 330, 400
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 8 cut(s) 155, 174, 177, 238, 499, 550, 915, 918
FokI GGATG 2 cut(s) 25, 815
Fsp4HI GCNGC 8 cut(s) 155, 174, 177, 238, 499, 550, 915, 918
FspBI CTAG 4 cut(s) 186, 272, 299, 344
GluI GCNGC 8 cut(s) 155, 174, 177, 238, 499, 550, 915, 918
GsuI CTGGAG 2 cut(s) 393, 982
HaeIII GGCC 2 cut(s) 240, 785
HapII CCGG 1 cut(s) 170
Hin1II CATG 4 cut(s) 166, 650, 784, 797
HincII GTYRAC 2 cut(s) 209, 349
HindII GTYRAC 2 cut(s) 209, 349
HinfI GANTC 3 cut(s) 221, 561, 581
HpaII CCGG 1 cut(s) 170
HphI GGTGA 5 cut(s) 148, 331, 365, 620, 1059
Hpy166II GTNNAC 2 cut(s) 209, 349
Hpy188I TCNGA 5 cut(s) 381, 467, 580, 586, 766
Hpy188III TCNNGA 2 cut(s) 618, 961
Hpy8I GTNNAC 2 cut(s) 209, 349
Hpy99I CGWCG 2 cut(s) 353, 375
HpyAV CCTTC 4 cut(s) 368, 566, 605, 1040
HpyCH4III ACNGT 2 cut(s) 92, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 182
HpyF3I CTNAG 7 cut(s) 45, 433, 464, 507, 512, 517, 828
Hsp92II CATG 4 cut(s) 166, 650, 784, 797
KpnI GGTACC 1 cut(s) 417
Kzo9I GATC 1 cut(s) 467
LguI GCTCTTC 3 cut(s) 23, 430, 539
LmnI GCTCC 3 cut(s) 172, 381, 557
Lsp1109I GCAGC 6 cut(s) 141, 188, 510, 561, 901, 904
LweI GCATC 3 cut(s) 3, 100, 166
MaeI CTAG 4 cut(s) 186, 272, 299, 344
MaeIII GTNAC 3 cut(s) 285, 353, 861
MalI GATC 1 cut(s) 469
MbiI CCGCTC 1 cut(s) 237
MboI GATC 1 cut(s) 467
MboII GAAGA 6 cut(s) 10, 417, 556, 652, 1040, 1056
MflI RGATCY 1 cut(s) 467
MluCI AATT 7 cut(s) 251, 258, 442, 449, 733, 809, 1022
MmeI TCCRAC 2 cut(s) 198, 359
MnlI CCTC 8 cut(s) 399, 823, 852, 904, 1036, 1048, 1080, 1083
MseI TTAA 1 cut(s) 1090
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 3 cut(s) 10, 134, 411
MvaI CCWGG 3 cut(s) 10, 134, 411
MwoI GCNNNNNNNGC 2 cut(s) 173, 182
NdeII GATC 1 cut(s) 467
NlaIII CATG 4 cut(s) 166, 650, 784, 797
NlaIV GGNNCC 3 cut(s) 168, 415, 537
NmuCI GTSAC 2 cut(s) 285, 353
NspI RCATGY 1 cut(s) 797
PciSI GCTCTTC 3 cut(s) 23, 430, 539
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 3 cut(s) 221, 561, 581
PflFI GACNNNGTC 1 cut(s) 375
PkrI GCNGC 8 cut(s) 156, 175, 178, 239, 500, 551, 916, 919
PshAI GACNNNNGTC 1 cut(s) 639
Psp6I CCWGG 3 cut(s) 8, 132, 409
PspEI GGTNACC 2 cut(s) 353, 861
PspGI CCWGG 3 cut(s) 8, 132, 409
PspN4I GGNNCC 3 cut(s) 168, 415, 537
PspPI GGNCC 1 cut(s) 848
PstI CTGCAG 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 375
RsaI GTAC 2 cut(s) 415, 899
RsaNI GTAC 2 cut(s) 414, 898
RseI CAYNNNNRTG 1 cut(s) 678
SalI GTCGAC 1 cut(s) 347
SapI GCTCTTC 3 cut(s) 23, 430, 539
SaqAI TTAA 1 cut(s) 1090
SatI GCNGC 8 cut(s) 155, 174, 177, 238, 499, 550, 915, 918
Sau3AI GATC 1 cut(s) 467
Sau96I GGNCC 1 cut(s) 848
ScrFI CCNGG 3 cut(s) 10, 134, 411
SfaNI GCATC 3 cut(s) 3, 100, 166
SfcI CTRYAG 1 cut(s) 637
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 3 cut(s) 601, 616, 1034
SmoI CTYRAG 3 cut(s) 601, 616, 1034
Sse9I AATT 7 cut(s) 251, 258, 442, 449, 733, 809, 1022
SsiI CCGC 4 cut(s) 173, 237, 323, 393
SspMI CTAG 4 cut(s) 186, 272, 299, 344
StyD4I CCNGG 3 cut(s) 8, 132, 409
StyI CCWWGG 2 cut(s) 786, 889
TaaI ACNGT 2 cut(s) 92, 353
TaqI TCGA 8 cut(s) 21, 35, 198, 303, 348, 370, 559, 882
TaqII GACCGA 1 cut(s) 194
TasI AATT 7 cut(s) 251, 258, 442, 449, 733, 809, 1022
TatI WGTACW 1 cut(s) 897
TauI GCSGC 2 cut(s) 176, 240
TfiI GAWTC 3 cut(s) 221, 561, 581
Tru1I TTAA 1 cut(s) 1090
Tru9I TTAA 1 cut(s) 1090
TscAI CASTG 3 cut(s) 60, 1001, 1015
TseFI GTSAC 2 cut(s) 285, 353
TseI GCWGC 6 cut(s) 154, 176, 498, 549, 914, 917
Tsp45I GTSAC 2 cut(s) 285, 353
TspDTI ATGAA 2 cut(s) 350, 417
TspGWI ACGGA 2 cut(s) 260, 815
TspRI CASTG 3 cut(s) 60, 1001, 1015
Tth111I GACNNNGTC 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 848
XapI RAATTY 5 cut(s) 251, 258, 449, 733, 809
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 4 cut(s) 186, 272, 299, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.