Rmu_sc0001097.1_g000001

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001097.1
OG0005301
Physical Location & Seq
Reverse (-)
4414 .. 7646
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
atgaaggagaggagaggagaggatctagagatggaagagcggagggaattttgggaggggggaggaaatgtagagttgggggctggggatactgggacaagggagccgggtcggatcgggttcggctttgaaggcctacgtgattgtggtgatgaagcagagaccataagaactcgaaaacgtggaacatattcgaaaacgttgaagtcactgtgtttggttcccttctatcgtagctccaagtctcaactttcatactctcacacacaaacagaaaaaatggctgagggatcagctggaaccaaacctgcgaagaagctcgtcgaaattgatataatttcggatactgtgtgcccatggtgctttgtgggcaagaggaatctcgacaaggctgtggaggcatccaacggtcgatatgactttaggattagatggcacccatatcagcttaatcctaatgcccctaaagaaggtcttgataagagtaagtactatgagcaaaaatttgggtctgatatgtctgcaaaaatgggcaataggatgtcagagattttcagaagccatggcctcgaatatgacctgtctggactcacgggaaatactctagacagtcacaggcttatctactttgccgggcagcaggatcttgcgaagcaacatgatcttgttggtgagctctttctcgggtacttcacacaggcaaagtacattggggacagggaatatcttctggaatgtgccaggaaggttggtgtagaaggagcagcagagtttcttgaggaccccaaccatggcctaaatgaggttaaagaagaccttaataagtactcgggcagcataaacggagtcccacatttcgtgattaataatggaaagcaagcattgagtggtgctcaaccgcctgagattttcttgaaagcttttgaagtagtaacaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

313

Amino Acids

35.21

Weight (kDa)

6.22

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSBA PF01323 110 - 308 1.4e-33 DSBA-like thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 2 cut(s) 40, 899
AclI AACGTT 1 cut(s) 200
AclWI GGATC 4 cut(s) 30, 122, 298, 651
AcsI RAATTY 2 cut(s) 47, 503
AfaI GTAC 4 cut(s) 491, 689, 707, 827
AfiI CCNNNNNNNGG 3 cut(s) 470, 791, 802
AgsI TTSAA 4 cut(s) 131, 205, 916, 926
AjnI CCWGG 1 cut(s) 740
AluBI AGCT 6 cut(s) 237, 296, 319, 448, 676, 920
AluI AGCT 6 cut(s) 237, 296, 319, 448, 676, 920
Alw21I GWGCWC 2 cut(s) 678, 895
Alw26I GTCTC 2 cut(s) 155, 249
AlwI GGATC 4 cut(s) 30, 122, 298, 651
Ama87I CYCGRG 2 cut(s) 683, 829
AoxI GGCC 3 cut(s) 133, 565, 793
ApeKI GCWGC 3 cut(s) 637, 764, 834
ApoI RAATTY 2 cut(s) 47, 503
AseI ATTAAT 1 cut(s) 864
Asp700I GAANNNNTTC 2 cut(s) 190, 726
AspS9I GGNCC 1 cut(s) 781
AsuC2I CCSGG 2 cut(s) 108, 634
AsuHPI GGTGA 2 cut(s) 161, 683
AsuII TTCGAA 1 cut(s) 194
AvaI CYCGRG 2 cut(s) 683, 829
AvaII GGWCC 1 cut(s) 781
BaeGI GKGCMC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 2 cut(s) 678, 895
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 649, 776, 846
BccI CCATC 2 cut(s) 25, 426
BciT130I CCWGG 1 cut(s) 742
BciVI GTATCC 2 cut(s) 82, 337
BcnI CCSGG 2 cut(s) 108, 634
BcoDI GTCTC 2 cut(s) 155, 249
BfaI CTAG 2 cut(s) 26, 605
BfuAI ACCTGC 1 cut(s) 316
BfuI GTATCC 2 cut(s) 82, 337
BisI GCNGC 3 cut(s) 638, 765, 835
BlsI GCNGC 3 cut(s) 639, 766, 836
BmcAI AGTACT 2 cut(s) 491, 827
Bme1390I CCNGG 3 cut(s) 108, 634, 742
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 2 cut(s) 683, 829
BmgT120I GGNCC 1 cut(s) 781
BmiI GGNNCC 5 cut(s) 105, 222, 301, 437, 783
BmrFI CCNGG 3 cut(s) 108, 634, 742
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 819
BplI GAGNNNNNCTC 2 cut(s) 877, 909
Bpu10I CCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 2 cut(s) 108, 634
BsaAI YACGTR 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 356, 562, 790
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 791, 802
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 742
BseDI CCNNGG 3 cut(s) 356, 562, 790
BseGI GGATG 2 cut(s) 401, 546
BseLI CCNNNNNNNGG 3 cut(s) 470, 791, 802
BseMII CTCAG 2 cut(s) 276, 894
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 25, 30
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 3 cut(s) 649, 776, 846
BseYI CCCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 3 cut(s) 135, 567, 795
BshNI GGYRCC 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 678, 895
BsiHKCI CYCGRG 2 cut(s) 683, 829
BsiSI CCGG 2 cut(s) 107, 633
BslFI GGGAC 3 cut(s) 109, 728, 833
BslI CCNNNNNNNGG 3 cut(s) 470, 791, 802
BsmAI GTCTC 2 cut(s) 155, 249
BsmFI GGGAC 3 cut(s) 109, 728, 833
BsnI GGCC 3 cut(s) 135, 567, 795
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 2 cut(s) 683, 829
Bsp119I TTCGAA 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 356, 678, 895
Bsp143I GATC 5 cut(s) 22, 114, 290, 643, 661
Bsp19I CCATGG 3 cut(s) 356, 562, 790
BspACI CCGC 2 cut(s) 40, 899
BspANI GGCC 3 cut(s) 135, 567, 795
BspCNI CTCAG 2 cut(s) 277, 895
BspLI GGNNCC 5 cut(s) 105, 222, 301, 437, 783
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 4 cut(s) 30, 122, 298, 651
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 356, 562, 790
BssMI GATC 5 cut(s) 22, 114, 290, 643, 661
BssT1I CCWWGG 3 cut(s) 356, 562, 790
Bst2UI CCWGG 1 cut(s) 742
Bst4CI ACNGT 4 cut(s) 213, 349, 410, 611
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 2 cut(s) 285, 903
BstDSI CCRYGG 3 cut(s) 356, 562, 790
BstENI CCTNNNNNAGG 2 cut(s) 468, 800
BstF5I GGATG 2 cut(s) 401, 546
BstKTI GATC 5 cut(s) 25, 117, 293, 646, 664
BstMAI GTCTC 2 cut(s) 155, 249
BstMBI GATC 5 cut(s) 22, 114, 290, 643, 661
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 132, 360, 369, 398
BstNI CCWGG 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 106, 632, 740
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 649, 776, 846
BstV2I GAAGAC 1 cut(s) 819
BstX2I RGATCY 2 cut(s) 22, 643
BstYI RGATCY 2 cut(s) 22, 643
BsuI GTATCC 2 cut(s) 82, 337
BsuRI GGCC 3 cut(s) 135, 567, 795
BtgI CCRYGG 3 cut(s) 356, 562, 790
BtsCI GGATG 2 cut(s) 401, 546
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 879
Cfr13I GGNCC 1 cut(s) 781
Csp6I GTAC 4 cut(s) 490, 688, 706, 826
CviAII CATG 4 cut(s) 357, 563, 659, 791
CviQI GTAC 4 cut(s) 490, 688, 706, 826
DdeI CTNAG 2 cut(s) 285, 903
DpnI GATC 5 cut(s) 24, 116, 292, 645, 663
DpnII GATC 5 cut(s) 22, 114, 290, 643, 661
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 676
Eco130I CCWWGG 3 cut(s) 356, 562, 790
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 678
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 676
Eco88I CYCGRG 2 cut(s) 683, 829
EcoICRI GAGCTC 1 cut(s) 676
EcoNI CCTNNNNNAGG 2 cut(s) 468, 800
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 740
EcoT14I CCWWGG 3 cut(s) 356, 562, 790
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 3 cut(s) 356, 562, 790
FaeI CATG 4 cut(s) 360, 566, 662, 794
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 801, 833
FaqI GGGAC 3 cut(s) 109, 728, 833
FatI CATG 4 cut(s) 356, 562, 658, 790
Fnu4HI GCNGC 3 cut(s) 638, 765, 835
FokI GGATG 2 cut(s) 388, 553
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 3 cut(s) 638, 765, 835
FspBI CTAG 2 cut(s) 26, 605
GluI GCNGC 3 cut(s) 638, 765, 835
GsaI CCCAGC 1 cut(s) 87
HaeIII GGCC 3 cut(s) 135, 567, 795
HapII CCGG 2 cut(s) 107, 633
Hin1II CATG 4 cut(s) 360, 566, 662, 794
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 3 cut(s) 379, 588, 846
HpaII CCGG 2 cut(s) 107, 633
HphI GGTGA 2 cut(s) 161, 683
Hpy188I TCNGA 5 cut(s) 114, 343, 514, 547, 557
Hpy188III TCNNGA 9 cut(s) 26, 383, 476, 585, 605, 731, 776, 859, 913
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 5 cut(s) 125, 235, 464, 739, 752
HpyCH4III ACNGT 4 cut(s) 213, 349, 410, 611
HpyCH4IV ACGT 3 cut(s) 139, 181, 200
HpyCH4V TGCA 1 cut(s) 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 360, 369, 398
HpyF3I CTNAG 2 cut(s) 285, 903
HpySE526I ACGT 3 cut(s) 139, 181, 200
Hsp92II CATG 4 cut(s) 360, 566, 662, 794
Kzo9I GATC 5 cut(s) 22, 114, 290, 643, 661
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 3 cut(s) 103, 242, 761
Lsp1109I GCAGC 3 cut(s) 649, 776, 846
LweI GCATC 1 cut(s) 410
MaeI CTAG 2 cut(s) 26, 605
MaeII ACGT 3 cut(s) 139, 181, 200
MaeIII GTNAC 3 cut(s) 207, 611, 931
MalI GATC 5 cut(s) 24, 116, 292, 645, 663
MbiI CCGCTC 1 cut(s) 40
MboI GATC 5 cut(s) 22, 114, 290, 643, 661
MboII GAAGA 4 cut(s) 47, 325, 719, 824
MflI RGATCY 2 cut(s) 22, 643
MhlI GDGCHC 3 cut(s) 356, 678, 895
MluCI AATT 4 cut(s) 47, 327, 336, 503
MlyI GAGTC 2 cut(s) 582, 855
MmeI TCCRAC 2 cut(s) 92, 429
MroXI GAANNNNTTC 2 cut(s) 190, 726
MseI TTAA 4 cut(s) 450, 807, 819, 864
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 107, 633
MspR9I CCNGG 3 cut(s) 108, 634, 742
MvaI CCWGG 1 cut(s) 742
MwoI GCNNNNNNNGC 4 cut(s) 132, 360, 369, 398
NciI CCSGG 2 cut(s) 108, 634
NcoI CCATGG 3 cut(s) 356, 562, 790
NdeII GATC 5 cut(s) 22, 114, 290, 643, 661
NlaIII CATG 4 cut(s) 360, 566, 662, 794
NlaIV GGNNCC 5 cut(s) 105, 222, 301, 437, 783
NmuCI GTSAC 2 cut(s) 207, 611
NspV TTCGAA 1 cut(s) 194
PceI AGGCCT 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 190, 726
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 639, 766, 836
PleI GAGTC 2 cut(s) 582, 854
PpsI GAGTC 2 cut(s) 582, 854
Ppu21I YACGTR 1 cut(s) 140
PpuMI RGGWCCY 1 cut(s) 781
PshBI ATTAAT 1 cut(s) 864
Psp124BI GAGCTC 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 740
PspN4I GGNNCC 5 cut(s) 105, 222, 301, 437, 783
PspPI GGNCC 1 cut(s) 781
PspPPI RGGWCCY 1 cut(s) 781
PsuI RGATCY 2 cut(s) 22, 643
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 4 cut(s) 491, 689, 707, 827
RsaNI GTAC 4 cut(s) 490, 688, 706, 826
SacI GAGCTC 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 4 cut(s) 450, 807, 819, 864
SatI GCNGC 3 cut(s) 638, 765, 835
Sau3AI GATC 5 cut(s) 22, 114, 290, 643, 661
Sau96I GGNCC 1 cut(s) 781
ScaI AGTACT 2 cut(s) 491, 827
SchI GAGTC 2 cut(s) 582, 855
ScrFI CCNGG 3 cut(s) 108, 634, 742
SduI GDGCHC 3 cut(s) 356, 678, 895
SfaNI GCATC 1 cut(s) 410
SfuI TTCGAA 1 cut(s) 194
SinI GGWCC 1 cut(s) 781
SmlI CTYRAG 1 cut(s) 776
SmoI CTYRAG 1 cut(s) 776
Sse9I AATT 4 cut(s) 47, 327, 336, 503
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 2 cut(s) 40, 899
SspMI CTAG 2 cut(s) 26, 605
SstI GAGCTC 1 cut(s) 678
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 106, 632, 740
StyI CCWWGG 3 cut(s) 356, 562, 790
TaaI ACNGT 4 cut(s) 213, 349, 410, 611
TaiI ACGT 3 cut(s) 142, 184, 203
TaqI TCGA 6 cut(s) 175, 194, 324, 384, 412, 570
TasI AATT 4 cut(s) 47, 327, 336, 503
TatI WGTACW 3 cut(s) 489, 705, 825
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 4 cut(s) 450, 807, 819, 864
Tru9I TTAA 4 cut(s) 450, 807, 819, 864
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 2 cut(s) 207, 611
TseI GCWGC 3 cut(s) 637, 764, 834
Tsp45I GTSAC 2 cut(s) 207, 611
TspDTI ATGAA 3 cut(s) 17, 168, 243
TspGWI ACGGA 1 cut(s) 858
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 781
VspI ATTAAT 1 cut(s) 864
XagI CCTNNNNNAGG 2 cut(s) 468, 800
XapI RAATTY 2 cut(s) 47, 503
XbaI TCTAGA 2 cut(s) 25, 604
XmnI GAANNNNTTC 2 cut(s) 190, 726
XspI CTAG 2 cut(s) 26, 605
ZrmI AGTACT 2 cut(s) 491, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.