Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001140.1

Orthogroup ID

OG0006280

Physical Location & Seq

Genomic Coordinates Forward (+)

38510 .. 43311

Gene Structure 4802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggaagcaggaagaagtggaagcaggaagccttacttggtcgttattgtgatacaaacaatatatgcaggcatgttcttgctctccaaggctgcattgaatggtggcatgaacatttatgtgtttgtgttttatagacaggctgctgcaactctctttttagttcctcttgctctttttctcgaatggaaaacggcgccaccgctgtctttcatgaccttctgcaagatttttctgctttcatttttcgggattactgtaagcttggacttctgtggcgttggccttctttatacgtcggcgactttgtctgcagcaatcagaaacagccttcctgtcattacttttctcttggcacttctactgaggatggaagtattgaagctaaggacaacctcaggtgtggctaagcttgcaggcatattattttgcacggcaggggtggtgaccctggccgtatacaaaggcccccgtttgaatctcctggggcatcataatctctttcatcaccataacatccaagagcatgaaggccatgttccatcgggaaaaacatggataaagggttgcttcctcgtgctgatgtgccacatcttttggggcttgtggcttgtgttgcaggtgacctattcgatccccacagccaccgtactccgtcagaccttctcaaccccaaaccaggggaaccgcaatgacaacccgcctctgccgcacaccggaatccctccgtcgcaccacccttgctcgaacaaacctccgccgcgcaaatccaagaacgaaacaaggaggagcccctctgcttgtcgttctctcaccaaacgcgacccaggcactcccagccctctgttcctgcccaaaaacctcctggccctcacctgtggactgacgcaactagttagcccgtccggcgacgatgtcccatggatgcgccgctggacgcgacatagaaaatttccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

319

Amino Acids

35.44

Weight (kDa)

10.18

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 136	2.7e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64700 AT5G64700
fragaria_vesca	FvH4_1g23640 FvH4_1g23640
prunus_persica	Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1 Prupe.6G160300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0119241
rosa_laevigata	RLG00000018458 RLG00000034036
rosa_multiflora	Rmu_sc0001140.1_g000010 Rmu_sc0004760.1_g000012 Rmu_sc0007618.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039430 Rroxscaffold_2G00124410
rosa_rugosa	Rorug02G0221200 Rorug05G0190500.1
rosa_samantha	Rh2AG279200 Rh2BG290000 Rh2DG285100 Rh2DG304100 Rh5AG276500 Rh5BG281500 Rh5CG313500 Rh5DG289500
rosa_wichuraiana	Rw2G022200 Rw5G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	3 cut(s)	763, 822, 940
AciI	CCGC	7 cut(s)	203, 688, 701, 710, 758, 761, 931
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	950
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	3 cut(s)	679, 680, 716
AgsI	TTSAA	3 cut(s)	100, 382, 478
AhlI	ACTAGT	1 cut(s)	892
AjnI	CCWGG	5 cut(s)	450, 483, 678, 826, 864
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	264, 385, 412
AluI	AGCT	3 cut(s)	264, 385, 412
AlwI	GGATC	1 cut(s)	628
AoxI	GGCC	5 cut(s)	283, 453, 466, 532, 867
ApeKI	GCWGC	4 cut(s)	92, 143, 146, 314
ApoI	RAATTY	1 cut(s)	950
AspLEI	GCGC	3 cut(s)	199, 765, 930
AspS9I	GGNCC	2 cut(s)	467, 868
AsuHPI	GGTGA	5 cut(s)	457, 500, 634, 805, 865
AxyI	CCTNAGG	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	794
BauI	CACGAG	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	79, 130, 133, 326
BccI	CCATC	2 cut(s)	364, 550
BceAI	ACGGC	3 cut(s)	210, 440, 450
BciT130I	CCWGG	5 cut(s)	452, 485, 680, 828, 866
BcuI	ACTAGT	1 cut(s)	892
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	610
BglI	GCCNNNNNGGC	1 cut(s)	906
BisI	GCNGC	7 cut(s)	93, 144, 147, 315, 710, 761, 931
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	7 cut(s)	94, 145, 148, 316, 711, 762, 932
Bme1390I	CCNGG	5 cut(s)	452, 485, 680, 828, 866
BmgT120I	GGNCC	2 cut(s)	467, 868
BmiI	GGNNCC	4 cut(s)	198, 469, 686, 791
BmrFI	CCNGG	5 cut(s)	452, 485, 680, 828, 866
BmsI	GCATC	2 cut(s)	499, 915
Bpu10I	CCTNAGC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	6 cut(s)	87, 450, 484, 679, 826, 920
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	3 cut(s)	679, 680, 716
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	697
BseBI	CCWGG	5 cut(s)	452, 485, 680, 828, 866
BseDI	CCNNGG	6 cut(s)	87, 450, 484, 679, 826, 920
BseGI	GGATG	3 cut(s)	375, 516, 930
BseLI	CCNNNNNNNGG	3 cut(s)	679, 680, 716
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	356, 411
BseRI	GAGGAG	1 cut(s)	802
BseXI	GCAGC	4 cut(s)	79, 130, 133, 326
BseYI	CCCAGC	1 cut(s)	836
Bsh1236I	CGCG	3 cut(s)	763, 822, 940
BshFI	GGCC	5 cut(s)	285, 455, 468, 534, 869
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	717, 906
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	3 cut(s)	679, 680, 716
BsmFI	GGGAC	1 cut(s)	902
BsnI	GGCC	5 cut(s)	285, 455, 468, 534, 869
Bsp1286I	GDGCHC	1 cut(s)	794
Bsp143I	GATC	1 cut(s)	633
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	920
BspACI	CCGC	7 cut(s)	203, 688, 701, 710, 758, 761, 931
BspANI	GGCC	5 cut(s)	285, 455, 468, 534, 869
BspCNI	CTCAG	2 cut(s)	357, 410
BspFNI	CGCG	3 cut(s)	763, 822, 940
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	198, 469, 686, 791
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	697
BssECI	CCNNGG	6 cut(s)	87, 450, 484, 679, 826, 920
BssMI	GATC	1 cut(s)	633
BssNAI	GTATAC	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	87, 920
Bst1107I	GTATAC	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	575
Bst2UI	CCWGG	5 cut(s)	452, 485, 680, 828, 866
Bst4CI	ACNGT	2 cut(s)	259, 649
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	70, 414, 418
BstDEI	CTNAG	4 cut(s)	365, 386, 397, 408
BstDSI	CCRYGG	1 cut(s)	920
BstEII	GGTNACC	2 cut(s)	445, 622
BstF5I	GGATG	3 cut(s)	375, 516, 930
BstFNI	CGCG	3 cut(s)	763, 822, 940
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	199, 765, 930
BstKTI	GATC	1 cut(s)	636
BstMBI	GATC	1 cut(s)	633
BstMWI	GCNNNNNNNGC	6 cut(s)	413, 616, 709, 828, 837, 906
BstNI	CCWGG	5 cut(s)	452, 485, 680, 828, 866
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	2 cut(s)	445, 622
BstSCI	CCNGG	5 cut(s)	450, 483, 678, 826, 864
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	3 cut(s)	763, 822, 940
BstV1I	GCAGC	4 cut(s)	79, 130, 133, 326
BstZ17I	GTATAC	1 cut(s)	460
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	285, 455, 468, 534, 869
BtgI	CCRYGG	1 cut(s)	920
BtsCI	GGATG	3 cut(s)	375, 516, 930
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	70, 414, 418
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	3 cut(s)	199, 765, 930
Cfr13I	GGNCC	2 cut(s)	467, 868
CseI	GACGC	2 cut(s)	895, 946
Csp6I	GTAC	1 cut(s)	650
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	7 cut(s)	73, 109, 214, 527, 536, 555, 921
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	4 cut(s)	365, 386, 397, 408
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	1 cut(s)	635
DpnII	GATC	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	87, 920
Eco24I	GRGCYC	1 cut(s)	794
Eco81I	CCTNAGG	1 cut(s)	397
Eco91I	GGTNACC	2 cut(s)	445, 622
EcoO109I	RGGNCCY	1 cut(s)	467
EcoO65I	GGTNACC	2 cut(s)	445, 622
EcoRII	CCWGG	5 cut(s)	450, 483, 678, 826, 864
EcoT14I	CCWWGG	2 cut(s)	87, 920
EcoT38I	GRGCYC	1 cut(s)	794
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	87, 920
FaeI	CATG	7 cut(s)	76, 112, 217, 530, 539, 558, 924
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 554, 586
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	7 cut(s)	72, 108, 213, 526, 535, 554, 920
FauI	CCCGC	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	7 cut(s)	93, 144, 147, 315, 710, 761, 931
FokI	GGATG	3 cut(s)	382, 503, 937
FriOI	GRGCYC	1 cut(s)	794
Fsp4HI	GCNGC	7 cut(s)	93, 144, 147, 315, 710, 761, 931
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	3 cut(s)	198, 764, 929
GluI	GCNGC	7 cut(s)	93, 144, 147, 315, 710, 761, 931
GsaI	CCCAGC	1 cut(s)	840
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	5 cut(s)	285, 455, 468, 534, 869
HapII	CCGG	2 cut(s)	717, 906
HgaI	GACGC	2 cut(s)	895, 946
HhaI	GCGC	3 cut(s)	199, 765, 930
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	76, 112, 217, 530, 539, 558, 924
Hin6I	GCGC	3 cut(s)	197, 763, 928
HinP1I	GCGC	3 cut(s)	197, 763, 928
HindIII	AAGCTT	2 cut(s)	262, 410
HinfI	GANTC	2 cut(s)	478, 720
HpaII	CCGG	2 cut(s)	717, 906
HphI	GGTGA	5 cut(s)	457, 500, 634, 805, 865
Hpy166II	GTNNAC	2 cut(s)	460, 881
Hpy188I	TCNGA	2 cut(s)	323, 660
Hpy188III	TCNNGA	4 cut(s)	182, 214, 250, 546
Hpy8I	GTNNAC	2 cut(s)	460, 881
Hpy99I	CGWCG	3 cut(s)	301, 733, 914
HpyAV	CCTTC	5 cut(s)	229, 296, 341, 524, 673
HpyCH4III	ACNGT	2 cut(s)	259, 649
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	8 cut(s)	68, 95, 149, 225, 314, 416, 432, 619
HpyF10VI	GCNNNNNNNGC	6 cut(s)	413, 616, 709, 828, 837, 906
HpyF3I	CTNAG	4 cut(s)	365, 386, 397, 408
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	76, 112, 217, 530, 539, 558, 924
HspAI	GCGC	3 cut(s)	197, 763, 928
KasI	GGCGCC	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	789
Lsp1109I	GCAGC	4 cut(s)	79, 130, 133, 326
LweI	GCATC	2 cut(s)	499, 915
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	445, 622
MalI	GATC	1 cut(s)	635
MboI	GATC	1 cut(s)	633
MboII	GAAGA	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	794
MluCI	AATT	1 cut(s)	950
Mly113I	GGCGCC	1 cut(s)	197
MseI	TTAA	1 cut(s)	958
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	205, 933
MspI	CCGG	2 cut(s)	717, 906
MspR9I	CCNGG	5 cut(s)	452, 485, 680, 828, 866
MvaI	CCWGG	5 cut(s)	452, 485, 680, 828, 866
MvnI	CGCG	3 cut(s)	763, 822, 940
MwoI	GCNNNNNNNGC	6 cut(s)	413, 616, 709, 828, 837, 906
NarI	GGCGCC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	920
NdeII	GATC	1 cut(s)	633
NlaIII	CATG	7 cut(s)	76, 112, 217, 530, 539, 558, 924
NlaIV	GGNNCC	4 cut(s)	198, 469, 686, 791
NmuCI	GTSAC	2 cut(s)	445, 622
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	213
PaqCI	CACCTGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	478, 720
PflFI	GACNNNGTC	2 cut(s)	307, 914
PkrI	GCNGC	7 cut(s)	94, 145, 148, 316, 711, 762, 932
PluTI	GGCGCC	1 cut(s)	200
Psp6I	CCWGG	5 cut(s)	450, 483, 678, 826, 864
PspEI	GGTNACC	2 cut(s)	445, 622
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	5 cut(s)	450, 483, 678, 826, 864
PspN4I	GGNNCC	4 cut(s)	198, 469, 686, 791
PspPI	GGNCC	2 cut(s)	467, 868
PstI	CTGCAG	1 cut(s)	316
PsyI	GACNNNGTC	2 cut(s)	307, 914
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	958
SatI	GCNGC	7 cut(s)	93, 144, 147, 315, 710, 761, 931
Sau3AI	GATC	1 cut(s)	633
Sau96I	GGNCC	2 cut(s)	467, 868
ScrFI	CCNGG	5 cut(s)	452, 485, 680, 828, 866
SduI	GDGCHC	1 cut(s)	794
SfaNI	GCATC	2 cut(s)	499, 915
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	892
Sse9I	AATT	1 cut(s)	950
SsiI	CCGC	7 cut(s)	203, 688, 701, 710, 758, 761, 931
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	1 cut(s)	893
StyD4I	CCNGG	5 cut(s)	450, 483, 678, 826, 864
StyI	CCWWGG	2 cut(s)	87, 920
TaaI	ACNGT	2 cut(s)	259, 649
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	183, 632, 746
TasI	AATT	1 cut(s)	950
TauI	GCSGC	3 cut(s)	712, 763, 933
TfiI	GAWTC	2 cut(s)	478, 720
Tru1I	TTAA	1 cut(s)	958
Tru9I	TTAA	1 cut(s)	958
TseFI	GTSAC	2 cut(s)	445, 622
TseI	GCWGC	4 cut(s)	92, 143, 146, 314
Tsp45I	GTSAC	2 cut(s)	445, 622
TspDTI	ATGAA	5 cut(s)	125, 202, 231, 494, 543
TspGWI	ACGGA	2 cut(s)	644, 717
Tth111I	GACNNNGTC	2 cut(s)	307, 914
XapI	RAATTY	1 cut(s)	950
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.