Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001208.1

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

172838 .. 175855

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggcgtctccagctatggcaccagttcaagacgatgatgatgatcaatatggtgagatttcctttagtcctgctgctgttggggtccaattgaaggatcaattatcttctggaaatgactatgctcccaaggtgaggaaaccatacacgatcacgaaacagagagagagatggacagaggaagagcataacaaattccttgaagctctaaaactccatggtcgggcatggcgaaagatacaagaccatgttggcagcaaaactgcggttcagattcgaagtcatgctcagaaattcttttctaaggttgctcgtgacccagatggtatcaacacaagctctgcagatcccattgacattcctcctcctaggccaaaacggaaaccaatgcgtccttacccccgaaaacatgttcaccctcttcatacggaaacctctaatctagagcagccaataaggtctgcacctaaaaaattatcagtttctgagattgaaaaccaatctccaacatcagtattatctccaatgggctcagatacaatcggttcttctgattcaagtacacctagtggtagtctatcccctgtttcattgaagctggagttatttcccacagacaatgtctatgatagtggcggttcagctgatgaggcatctgccagaagccttaagcttttcggaaggactgtattggtcacagactcccaccgacctctctctggtggaacttgcaagtcaatctcttatgacacgcaagaggagaaatgtgggcaaacatcaataccatataactttatgcctattcaatgtgcatttgggaatgtggaacatgtttggaatagacatcaactcatccattttcctcaatgtcaaaatgagaattggaatcgatctggttcttctaatcttataccatggtgtaccttaggtgcagattcatccgttccatttcttccattcagtaaccagcagacaatgaaatcatattttgattgtaaccttgaagatccccacgataaagatgttcagaaagaaagttcttggaacggttcagatgctggatcagtaagtgatgaggaaaatggaggcaaatgtttagatgtagagatgcatggggatctgcaaatttctgaaaaagaaaaagttgaagagccgaattcgatgctcggtactcaacttcaggtcaagacagggatcagaaaagagtccacctttgttagtagttgtgatactgttgagggtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

415

Amino Acids

45.92

Weight (kDa)

5.66

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 98	6.3e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	2 cut(s)	266, 636
AclWI	GGATC	6 cut(s)	105, 341, 1001, 1069, 1125, 1202
AcsI	RAATTY	4 cut(s)	194, 293, 1125, 1156
AcuI	CTGAAG	1 cut(s)	1163
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	569
AfaI	GTAC	3 cut(s)	562, 922, 1171
AfiI	CCNNNNNNNGG	4 cut(s)	94, 135, 223, 719
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	2 cut(s)	409, 829
AgsI	TTSAA	9 cut(s)	29, 94, 203, 494, 558, 595, 806, 1004, 1148
AluBI	AGCT	6 cut(s)	14, 206, 339, 598, 644, 673
AluI	AGCT	6 cut(s)	14, 206, 339, 598, 644, 673
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	6 cut(s)	105, 341, 1001, 1069, 1125, 1202
AlwNI	CAGNNNCTG	2 cut(s)	485, 1058
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	3 cut(s)	74, 255, 448
ApoI	RAATTY	4 cut(s)	194, 293, 1125, 1156
AspA2I	CCTAGG	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	85, 1241
AsuHPI	GGTGA	3 cut(s)	65, 145, 407
AsuII	TTCGAA	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	85, 1241
AvrII	CCTAGG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	533
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	61, 267, 460
BccI	CCATC	2 cut(s)	165, 317
BcgI	CGANNNNNNTGC	2 cut(s)	1144, 1178
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	3 cut(s)	369, 443, 567
BfmI	CTRYAG	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	3 cut(s)	75, 256, 449
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	3 cut(s)	76, 257, 450
Bme18I	GGWCC	2 cut(s)	85, 1241
BmgT120I	GGNCC	2 cut(s)	85, 1241
BmiI	GGNNCC	3 cut(s)	21, 86, 1242
BmsI	GCATC	4 cut(s)	662, 1045, 1098, 1152
BpmI	CTGGAG	1 cut(s)	620
Bpu14I	TTCGAA	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	129, 217, 368, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 135, 223, 719
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	925
Bse8I	GATNNNNATC	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	889
BseDI	CCNNGG	4 cut(s)	129, 217, 368, 914
BseGI	GGATG	2 cut(s)	852, 938
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	94, 135, 223, 719
BseMII	CTCAG	3 cut(s)	302, 477, 546
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	354, 773
BseXI	GCAGC	3 cut(s)	61, 267, 460
BsgI	GTGCAG	2 cut(s)	447, 951
BshFI	GGCC	1 cut(s)	373
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	889
BslI	CCNNNNNNNGG	4 cut(s)	94, 135, 223, 719
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
Bsp19I	CCATGG	2 cut(s)	217, 914
BspACI	CCGC	2 cut(s)	266, 636
BspANI	GGCC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	301, 478, 545
BspDI	ATCGAT	1 cut(s)	889
BspLI	GGNNCC	3 cut(s)	21, 86, 1242
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	6 cut(s)	105, 341, 1001, 1069, 1125, 1202
BspQI	GCTCTTC	2 cut(s)	177, 1143
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	668
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	129, 217, 368, 914
BssMI	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	4 cut(s)	129, 217, 368, 914
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	688, 1049, 1234
Bst6I	CTCTTC	3 cut(s)	177, 426, 1143
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	668
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	5 cut(s)	288, 303, 486, 532, 925
BstDSI	CCRYGG	2 cut(s)	217, 914
BstF5I	GGATG	2 cut(s)	852, 938
BstKTI	GATC	9 cut(s)	46, 100, 153, 349, 893, 1009, 1064, 1120, 1197
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 650
BstNSI	RCATGY	2 cut(s)	413, 833
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	61, 267, 460
BstX2I	RGATCY	3 cut(s)	346, 1006, 1117
BstYI	RGATCY	3 cut(s)	346, 1006, 1117
Bsu15I	ATCGAT	1 cut(s)	889
Bsu36I	CCTNAGG	1 cut(s)	925
BsuRI	GGCC	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	889
BtgI	CCRYGG	2 cut(s)	217, 914
BtsCI	GGATG	2 cut(s)	852, 938
CaiI	CAGNNNCTG	2 cut(s)	485, 1058
Cfr13I	GGNCC	2 cut(s)	85, 1241
ClaI	ATCGAT	1 cut(s)	889
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	3 cut(s)	561, 921, 1170
CviAII	CATG	8 cut(s)	218, 228, 248, 284, 410, 830, 915, 1112
CviQI	GTAC	3 cut(s)	561, 921, 1170
DdeI	CTNAG	5 cut(s)	288, 303, 486, 532, 925
DpnI	GATC	9 cut(s)	45, 99, 152, 348, 892, 1008, 1063, 1119, 1196
DpnII	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
DraIII	CACNNNGTG	1 cut(s)	569
Eam1104I	CTCTTC	3 cut(s)	177, 426, 1143
EarI	CTCTTC	3 cut(s)	177, 426, 1143
Eco130I	CCWWGG	4 cut(s)	129, 217, 368, 914
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	85, 1241
Eco57I	CTGAAG	1 cut(s)	1163
Eco81I	CCTNAGG	1 cut(s)	925
EcoO109I	RGGNCCY	1 cut(s)	1241
EcoRI	GAATTC	1 cut(s)	1156
EcoT14I	CCWWGG	4 cut(s)	129, 217, 368, 914
EcoT22I	ATGCAT	1 cut(s)	1113
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	4 cut(s)	129, 217, 368, 914
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	8 cut(s)	221, 231, 251, 287, 413, 833, 918, 1115
FatI	CATG	8 cut(s)	217, 227, 247, 283, 409, 829, 914, 1111
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	75, 256, 449
FokI	GGATG	2 cut(s)	839, 925
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	75, 256, 449
FspBI	CTAG	3 cut(s)	369, 443, 567
GluI	GCNGC	3 cut(s)	75, 256, 449
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	373
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	221, 231, 251, 287, 413, 833, 918, 1115
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	6 cut(s)	274, 554, 701, 886, 935, 1205
HphI	GGTGA	3 cut(s)	65, 145, 407
Hpy166II	GTNNAC	4 cut(s)	415, 563, 921, 1209
Hpy188III	TCNNGA	6 cut(s)	29, 111, 154, 314, 443, 1186
Hpy8I	GTNNAC	4 cut(s)	415, 563, 921, 1209
HpyAV	CCTTC	2 cut(s)	88, 675
HpyCH4III	ACNGT	3 cut(s)	688, 1049, 1234
HpyCH4V	TGCA	7 cut(s)	344, 464, 732, 812, 932, 1111, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 650
HpyF3I	CTNAG	5 cut(s)	288, 303, 486, 532, 925
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	221, 231, 251, 287, 413, 833, 918, 1115
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
LguI	GCTCTTC	2 cut(s)	177, 1143
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	3 cut(s)	61, 267, 460
LweI	GCATC	4 cut(s)	662, 1045, 1098, 1152
MaeI	CTAG	3 cut(s)	369, 443, 567
MaeIII	GTNAC	4 cut(s)	314, 694, 962, 995
MalI	GATC	9 cut(s)	45, 99, 152, 348, 892, 1008, 1063, 1119, 1196
MboI	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
MboII	GAAGA	8 cut(s)	99, 194, 413, 540, 891, 944, 1016, 1160
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	3 cut(s)	346, 1006, 1117
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	8 cut(s)	89, 101, 194, 293, 473, 880, 1125, 1156
MlyI	GAGTC	2 cut(s)	695, 1214
MmeI	TCCRAC	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	1113
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	11, 650
NcoI	CCATGG	2 cut(s)	217, 914
NdeII	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
NlaIII	CATG	8 cut(s)	221, 231, 251, 287, 413, 833, 918, 1115
NlaIV	GGNNCC	3 cut(s)	21, 86, 1242
NmuCI	GTSAC	2 cut(s)	314, 694
NsiI	ATGCAT	1 cut(s)	1113
NspI	RCATGY	2 cut(s)	413, 833
NspV	TTCGAA	1 cut(s)	277
PciI	ACATGT	2 cut(s)	409, 829
PciSI	GCTCTTC	2 cut(s)	177, 1143
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	4 cut(s)	274, 554, 886, 935
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	76, 257, 450
PleI	GAGTC	2 cut(s)	695, 1213
PpsI	GAGTC	2 cut(s)	695, 1213
PpuMI	RGGWCCY	1 cut(s)	1241
PscI	ACATGT	2 cut(s)	409, 829
Psp5II	RGGWCCY	1 cut(s)	1241
PspN4I	GGNNCC	3 cut(s)	21, 86, 1242
PspPI	GGNCC	2 cut(s)	85, 1241
PspPPI	RGGWCCY	1 cut(s)	1241
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	485, 1058
PsuI	RGATCY	3 cut(s)	346, 1006, 1117
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	3 cut(s)	562, 922, 1171
RsaNI	GTAC	3 cut(s)	561, 921, 1170
SapI	GCTCTTC	2 cut(s)	177, 1143
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	3 cut(s)	75, 256, 449
Sau3AI	GATC	9 cut(s)	43, 97, 150, 346, 890, 1006, 1061, 1117, 1194
Sau96I	GGNCC	2 cut(s)	85, 1241
SchI	GAGTC	2 cut(s)	695, 1214
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	4 cut(s)	662, 1045, 1098, 1152
SfcI	CTRYAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	2 cut(s)	85, 1241
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	8 cut(s)	89, 101, 194, 293, 473, 880, 1125, 1156
SsiI	CCGC	2 cut(s)	266, 636
SspMI	CTAG	3 cut(s)	369, 443, 567
StyI	CCWWGG	4 cut(s)	129, 217, 368, 914
TaaI	ACNGT	3 cut(s)	688, 1049, 1234
TaqI	TCGA	3 cut(s)	277, 889, 1160
TasI	AATT	8 cut(s)	89, 101, 194, 293, 473, 880, 1125, 1156
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	274, 554, 886, 935
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TseFI	GTSAC	2 cut(s)	314, 694
TseI	GCWGC	3 cut(s)	74, 255, 448
Tsp45I	GTSAC	2 cut(s)	314, 694
TspDTI	ATGAA	4 cut(s)	413, 579, 927, 992
TspGWI	ACGGA	3 cut(s)	394, 443, 931
Tth111I	GACNNNGTC	1 cut(s)	620
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	85, 1241
XapI	RAATTY	4 cut(s)	194, 293, 1125, 1156
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	2 cut(s)	413, 833
XmaJI	CCTAGG	1 cut(s)	368
XspI	CTAG	3 cut(s)	369, 443, 567
Zsp2I	ATGCAT	1 cut(s)	1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.