Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001218.1

Orthogroup ID

OG0016470

Physical Location & Seq

Genomic Coordinates Forward (+)

211814 .. 213845

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001218.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

atgtgtcaggttaccttgaaggagaaggttgctattggagaactaaacactagcggaagtgatgatgtattgacgttggctttggggactcctgagcatcctggaagagtgagaggcgtgggaggttatgtgaacccctccatttacttccacttccctaaacgtagaaaggagagcatccatgaggcggtgaaaataattgcagaagaaagggcattttggattgctaaatttgcagagctagaagcaaaggtagatggaaggcgtagtgggacaagcgacaaaagtaatctgcatggttctgtgggtagttgttcacaaaccgatattcccggtgttggtgaagtgagatgtgatgtgatggaagaagcagcgactcgttttgatgggaaatcagttcaaaaagttctagctgcattggaagaaaagctggtgcttaaaaaggtttccaagaagaaggagaaggatgccaaatctgtccccattaaccacaaacataatgaccagggcaagttggctgaggtggtagataatgcaaaactggaagaagatcaagctcaggtgcatgatgaccctatagggtatatagatttgacaacaaagcaagaaaaatcaaaggttatgggagttgagattgatgccaagttggcattagggtcaattgaccatattgtagctctagctactgttatggaatgcgatgactcctctcaaacttgtcatggttatccactaggggataataatgtgcgagtttcagtctattgtgttgtagatgagaaagccttggttccatttcctgtggccgatgaaatactaactgttaggcaagccatggggagctgggtagcatggccaaaagagctggtcataatgtcacatgacaagaaatttaccaaggagaaagctgagaagaggaagagaaaaaaattggtactggaagaagacgaaaatgctaaggtactaattagcttaaagtctttagcaccttccttgccagctccattgaagatactttgcaattggggtgaagaggcatttaaagatgggcgtgctatcacgttcgaaatggagtctgaagtatttgggtatcaacgaaagacgtttatactaggatcagatgttgaaagaattgctagcatgagggaagttactggaaactgcatagtggtataccagaggtaccttcttgatttattgactcgatataaaatgctggatatggttgcttttgttgacccttcaatgatcggtgcaatccggtacggggatggtcatgcccagtcccagcatatcaaggataggcttttaacggcaaaaccaaaccagattttcttgctgccttataacgcagataatcattggatgcttactgttatgaatccagaggaaaacactgtctatttcatggatccgttgaagaggcggttacccactggagaatggagatcaattgttgatacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

488

Amino Acids

54.66

Weight (kDa)

6.39

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016470)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001218.1_g000051
rosa_roxburghii	Rroxscaffold_2G00088580 Rroxscaffold_2G00091280
rosa_rugosa	Rorug07G0202600.1
rosa_samantha	Rh1AG329100 Rh1DG304000 Rh2AG183900 Rh2AG363100 Rh2BG380700 Rh4AG001700 Rh4AG112000 Rh5AG202700 Rh6AG079400 Rh6BG156600 Rh6BG176400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1347
Acc65I	GGTACC	1 cut(s)	1182
AccB1I	GGYRCC	1 cut(s)	1182
AccI	GTMKAC	1 cut(s)	1173
AciI	CCGC	3 cut(s)	54, 188, 1426
AclWI	GGATC	3 cut(s)	1123, 1406, 1419
AcoI	YGGCCR	2 cut(s)	804, 854
AcsI	RAATTY	2 cut(s)	230, 890
AcuI	CTGAAG	1 cut(s)	1098
AfaI	GTAC	4 cut(s)	936, 963, 1184, 1265
AfiI	CCNNNNNNNGG	3 cut(s)	187, 338, 1267
AgsI	TTSAA	6 cut(s)	19, 401, 1009, 1127, 1245, 1420
AjnI	CCWGG	2 cut(s)	100, 504
AlwI	GGATC	3 cut(s)	1123, 1406, 1419
AoxI	GGCC	2 cut(s)	804, 854
ApeKI	GCWGC	3 cut(s)	371, 413, 1339
ApoI	RAATTY	2 cut(s)	230, 890
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp718I	GGTACC	1 cut(s)	1182
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	3 cut(s)	202, 353, 1040
AsuII	TTCGAA	1 cut(s)	1065
AsuNHI	GCTAGC	1 cut(s)	1136
BalI	TGGCCA	1 cut(s)	856
BamHI	GGATCC	1 cut(s)	1411
BanI	GGYRCC	1 cut(s)	1182
BbsI	GAAGAC	1 cut(s)	951
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	383, 400, 1326
BccI	CCATC	5 cut(s)	251, 355, 380, 1040, 1265
BceAI	ACGGC	1 cut(s)	1329
BciT130I	CCWGG	2 cut(s)	102, 506
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	7 cut(s)	51, 242, 410, 680, 734, 1112, 1137
BfmI	CTRYAG	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	647
BisI	GCNGC	3 cut(s)	372, 414, 1340
BlsI	GCNGC	3 cut(s)	373, 415, 1341
Bme1390I	CCNGG	3 cut(s)	102, 333, 506
BmiI	GGNNCC	3 cut(s)	792, 1184, 1413
BmrFI	CCNGG	3 cut(s)	102, 333, 506
BmrI	ACTGGG	1 cut(s)	1276
BmsI	GCATC	5 cut(s)	106, 186, 457, 628, 1356
BmtI	GCTAGC	1 cut(s)	1140
BmuI	ACTGGG	1 cut(s)	1276
BpiI	GAAGAC	1 cut(s)	951
BpmI	CTGGAG	1 cut(s)	1458
Bpu10I	CCTNAGC	4 cut(s)	93, 519, 558, 957
Bpu14I	TTCGAA	1 cut(s)	1065
BpuMI	CCSGG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	1464
BsaJI	CCNNGG	4 cut(s)	505, 786, 834, 897
BsaWI	WCCGGW	1 cut(s)	1260
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 338, 1267
Bse1I	ACTGG	5 cut(s)	546, 942, 1159, 1282, 1441
BseBI	CCWGG	2 cut(s)	102, 506
BseDI	CCNNGG	4 cut(s)	505, 786, 834, 897
BseGI	GGATG	5 cut(s)	97, 177, 472, 1276, 1371
BseLI	CCNNNNNNNGG	3 cut(s)	187, 338, 1267
BseMII	CTCAG	4 cut(s)	84, 510, 572, 900
BseNI	ACTGG	5 cut(s)	546, 942, 1159, 1282, 1441
BseRI	GAGGAG	1 cut(s)	697
BseXI	GCAGC	3 cut(s)	383, 400, 1326
BseYI	CCCAGC	2 cut(s)	843, 1287
BshFI	GGCC	2 cut(s)	806, 856
BshNI	GGYRCC	1 cut(s)	1182
BsiSI	CCGG	2 cut(s)	333, 1261
BslFI	GGGAC	4 cut(s)	100, 286, 464, 1270
BslI	CCNNNNNNNGG	3 cut(s)	187, 338, 1267
BsmFI	GGGAC	4 cut(s)	100, 286, 464, 1270
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	806, 856
Bsp119I	TTCGAA	1 cut(s)	1065
Bsp143I	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	3 cut(s)	54, 188, 1426
BspANI	GGCC	2 cut(s)	806, 856
BspCNI	CTCAG	4 cut(s)	85, 511, 571, 901
BspLI	GGNNCC	3 cut(s)	792, 1184, 1413
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	3 cut(s)	1123, 1406, 1419
BspT104I	TTCGAA	1 cut(s)	1065
BspT107I	GGYRCC	1 cut(s)	1182
BsrI	ACTGG	5 cut(s)	546, 942, 1159, 1282, 1441
BssECI	CCNNGG	4 cut(s)	505, 786, 834, 897
BssMI	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
BssNAI	GTATAC	1 cut(s)	1174
BssT1I	CCWWGG	3 cut(s)	786, 834, 897
Bst1107I	GTATAC	1 cut(s)	1174
Bst2UI	CCWGG	2 cut(s)	102, 506
Bst4CI	ACNGT	4 cut(s)	688, 823, 1375, 1399
Bst6I	CTCTTC	5 cut(s)	100, 908, 914, 1026, 1415
BstBAI	YACGTR	1 cut(s)	1464
BstBI	TTCGAA	1 cut(s)	1065
BstC8I	GCNNGC	4 cut(s)	831, 999, 1053, 1138
BstDEI	CTNAG	5 cut(s)	93, 519, 558, 909, 957
BstDSI	CCRYGG	1 cut(s)	834
BstEII	GGTNACC	2 cut(s)	10, 1428
BstF5I	GGATG	5 cut(s)	97, 177, 472, 1276, 1371
BstKTI	GATC	5 cut(s)	553, 1118, 1251, 1414, 1451
BstMBI	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 647, 862
BstNI	CCWGG	2 cut(s)	102, 506
BstPI	GGTNACC	2 cut(s)	10, 1428
BstSCI	CCNGG	3 cut(s)	100, 331, 504
BstSFI	CTRYAG	1 cut(s)	576
BstSNI	TACGTA	1 cut(s)	1464
BstV1I	GCAGC	3 cut(s)	383, 400, 1326
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	1411
BstYI	RGATCY	1 cut(s)	1411
BstZ17I	GTATAC	1 cut(s)	1174
BsuRI	GGCC	2 cut(s)	806, 856
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	5 cut(s)	97, 177, 472, 1276, 1371
BtsIMutI	CAGTG	2 cut(s)	1395, 1434
Cac8I	GCNNGC	4 cut(s)	831, 999, 1053, 1138
Csp6I	GTAC	4 cut(s)	935, 962, 1183, 1264
CviQI	GTAC	4 cut(s)	935, 962, 1183, 1264
DdeI	CTNAG	5 cut(s)	93, 519, 558, 909, 957
DpnI	GATC	5 cut(s)	552, 1117, 1250, 1413, 1450
DpnII	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
DraI	TTTAAA	1 cut(s)	1042
EaeI	YGGCCR	2 cut(s)	804, 854
Eam1104I	CTCTTC	5 cut(s)	100, 908, 914, 1026, 1415
EarI	CTCTTC	5 cut(s)	100, 908, 914, 1026, 1415
Eco105I	TACGTA	1 cut(s)	1464
Eco130I	CCWWGG	3 cut(s)	786, 834, 897
Eco57I	CTGAAG	1 cut(s)	1098
Eco91I	GGTNACC	2 cut(s)	10, 1428
EcoO65I	GGTNACC	2 cut(s)	10, 1428
EcoRII	CCWGG	2 cut(s)	100, 504
EcoT14I	CCWWGG	3 cut(s)	786, 834, 897
ErhI	CCWWGG	3 cut(s)	786, 834, 897
FaqI	GGGAC	4 cut(s)	100, 286, 464, 1270
FblI	GTMKAC	1 cut(s)	1173
Fnu4HI	GCNGC	3 cut(s)	372, 414, 1340
FokI	GGATG	5 cut(s)	84, 164, 479, 1283, 1378
Fsp4HI	GCNGC	3 cut(s)	372, 414, 1340
FspBI	CTAG	7 cut(s)	51, 242, 410, 680, 734, 1112, 1137
GluI	GCNGC	3 cut(s)	372, 414, 1340
GsaI	CCCAGC	2 cut(s)	847, 1291
GsuI	CTGGAG	1 cut(s)	1458
HaeIII	GGCC	2 cut(s)	806, 856
HapII	CCGG	2 cut(s)	333, 1261
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HinfI	GANTC	6 cut(s)	88, 376, 704, 1073, 1201, 1381
HpaII	CCGG	2 cut(s)	333, 1261
HphI	GGTGA	3 cut(s)	202, 353, 1040
Hpy166II	GTNNAC	4 cut(s)	133, 317, 1174, 1237
Hpy188I	TCNGA	2 cut(s)	1078, 1120
Hpy188III	TCNNGA	3 cut(s)	92, 1190, 1385
Hpy8I	GTNNAC	4 cut(s)	133, 317, 1174, 1237
HpyAV	CCTTC	8 cut(s)	13, 19, 255, 451, 457, 999, 1196, 1251
HpyCH4III	ACNGT	4 cut(s)	688, 823, 1375, 1399
HpyCH4IV	ACGT	5 cut(s)	74, 163, 1061, 1103, 1463
HpyCH4V	TGCA	9 cut(s)	203, 236, 295, 416, 536, 565, 1020, 1164, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 647, 862
HpyF3I	CTNAG	5 cut(s)	93, 519, 558, 909, 957
HpySE526I	ACGT	5 cut(s)	74, 163, 1061, 1103, 1463
KpnI	GGTACC	1 cut(s)	1186
Kzo9I	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
LmnI	GCTCC	2 cut(s)	840, 1006
Lsp1109I	GCAGC	3 cut(s)	383, 400, 1326
LweI	GCATC	5 cut(s)	106, 186, 457, 628, 1356
MaeI	CTAG	7 cut(s)	51, 242, 410, 680, 734, 1112, 1137
MaeII	ACGT	5 cut(s)	74, 163, 1061, 1103, 1463
MaeIII	GTNAC	4 cut(s)	10, 876, 1150, 1428
MalI	GATC	5 cut(s)	552, 1117, 1250, 1413, 1450
MboI	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
MfeI	CAATTG	3 cut(s)	660, 1021, 1452
MflI	RGATCY	1 cut(s)	1411
MlsI	TGGCCA	1 cut(s)	856
MluCI	AATT	9 cut(s)	198, 230, 660, 890, 929, 966, 1021, 1131, 1452
MluNI	TGGCCA	1 cut(s)	856
MlyI	GAGTC	5 cut(s)	82, 370, 698, 1082, 1195
Mox20I	TGGCCA	1 cut(s)	856
MscI	TGGCCA	1 cut(s)	856
MseI	TTAA	5 cut(s)	438, 486, 974, 1041, 1310
Msp20I	TGGCCA	1 cut(s)	856
MspI	CCGG	2 cut(s)	333, 1261
MspR9I	CCNGG	3 cut(s)	102, 333, 506
MunI	CAATTG	3 cut(s)	660, 1021, 1452
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	2 cut(s)	102, 506
MwoI	GCNNNNNNNGC	3 cut(s)	233, 647, 862
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
NheI	GCTAGC	1 cut(s)	1136
NlaIV	GGNNCC	3 cut(s)	792, 1184, 1413
NmuCI	GTSAC	1 cut(s)	876
NspV	TTCGAA	1 cut(s)	1065
PctI	GAATGC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	1381
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	373, 415, 1341
PleI	GAGTC	5 cut(s)	82, 370, 698, 1081, 1195
PpsI	GAGTC	5 cut(s)	82, 370, 698, 1081, 1195
Ppu21I	YACGTR	1 cut(s)	1464
PsiI	TTATAA	1 cut(s)	1347
Psp6I	CCWGG	2 cut(s)	100, 504
PspEI	GGTNACC	2 cut(s)	10, 1428
PspFI	CCCAGC	2 cut(s)	843, 1287
PspGI	CCWGG	2 cut(s)	100, 504
PspN4I	GGNNCC	3 cut(s)	792, 1184, 1413
PsuI	RGATCY	1 cut(s)	1411
RsaI	GTAC	4 cut(s)	936, 963, 1184, 1265
RsaNI	GTAC	4 cut(s)	935, 962, 1183, 1264
SaqAI	TTAA	5 cut(s)	438, 486, 974, 1041, 1310
SatI	GCNGC	3 cut(s)	372, 414, 1340
Sau3AI	GATC	5 cut(s)	550, 1115, 1248, 1411, 1448
SchI	GAGTC	5 cut(s)	82, 370, 698, 1082, 1195
ScrFI	CCNGG	3 cut(s)	102, 333, 506
SfaNI	GCATC	5 cut(s)	106, 186, 457, 628, 1356
SfcI	CTRYAG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	1065
SnaBI	TACGTA	1 cut(s)	1464
Sse9I	AATT	9 cut(s)	198, 230, 660, 890, 929, 966, 1021, 1131, 1452
SsiI	CCGC	3 cut(s)	54, 188, 1426
SspMI	CTAG	7 cut(s)	51, 242, 410, 680, 734, 1112, 1137
StyD4I	CCNGG	3 cut(s)	100, 331, 504
StyI	CCWWGG	3 cut(s)	786, 834, 897
TaaI	ACNGT	4 cut(s)	688, 823, 1375, 1399
TaiI	ACGT	5 cut(s)	77, 166, 1064, 1106, 1466
TaqI	TCGA	2 cut(s)	1065, 1204
TasI	AATT	9 cut(s)	198, 230, 660, 890, 929, 966, 1021, 1131, 1452
TfiI	GAWTC	1 cut(s)	1381
Tru1I	TTAA	5 cut(s)	438, 486, 974, 1041, 1310
Tru9I	TTAA	5 cut(s)	438, 486, 974, 1041, 1310
TscAI	CASTG	2 cut(s)	1402, 1441
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	3 cut(s)	371, 413, 1339
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	3 cut(s)	825, 1394, 1396
TspGWI	ACGGA	1 cut(s)	1404
TspRI	CASTG	2 cut(s)	1402, 1441
XapI	RAATTY	2 cut(s)	230, 890
XmiI	GTMKAC	1 cut(s)	1173
XspI	CTAG	7 cut(s)	51, 242, 410, 680, 734, 1112, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.