Rh4AG112000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
24230447 .. 24232961
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG112000.1

Sequence Viewer

Length: 324 bp
ATGATTGAGATAATTGGTTTACTTTGCAGCGAAAGGGTGGGCAAAATTCAAGACAGAAACCAAAGACGAAGTGCTAGCAGTGTAAGCGGTGGGCAAACTAAAGCATTAGTTCTACCCATTCAGTTCTGGAAGAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGTGGTGGATAATGCAAAATTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTCTACATATTTGACAACACAGCAAGAAAAATCAAAGAGGCAGCAGGAAAGGCAGGAGTTCAGTTTTGTGGCAGAATTTAGCGGTAAGTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.09

Weight (kDa)

5.4

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 230
AciI CCGC 2 cut(s) 87, 309
AcsI RAATTY 2 cut(s) 45, 302
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 27, 268
ApoI RAATTY 2 cut(s) 45, 302
AsuNHI GCTAGC 1 cut(s) 74
BbvCI CCTCAGC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 39, 280
BciT130I CCWGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 2 cut(s) 28, 269
BlsI GCNGC 2 cut(s) 29, 270
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BmtI GCTAGC 1 cut(s) 78
Bpu10I CCTNAGC 2 cut(s) 153, 204
BsaJI CCNNGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 144, 218
BseXI GCAGC 2 cut(s) 39, 280
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 87, 309
BspCNI CTCAG 2 cut(s) 145, 217
BspOI GCTAGC 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 153, 204
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 84, 277
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 39, 280
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 76
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 152, 203
CviKI_1 RGCY 2 cut(s) 152, 203
DdeI CTNAG 2 cut(s) 153, 204
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 215
FaiI YATR 4 cut(s) 213, 224, 235, 318
FatI CATG 1 cut(s) 211
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 28, 269
Fsp4HI GCNGC 2 cut(s) 28, 269
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 28, 269
Hin1II CATG 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 20, 231
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 50, 127
Hpy8I GTNNAC 2 cut(s) 20, 231
HpyCH4V TGCA 3 cut(s) 27, 182, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 277
HpyF3I CTNAG 2 cut(s) 153, 204
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 6 cut(s) 112, 125, 152, 191, 257, 266
Lsp1109I GCAGC 2 cut(s) 39, 280
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 142, 203, 206
MluCI AATT 4 cut(s) 12, 45, 185, 302
MnlI CCTC 2 cut(s) 148, 258
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 84, 277
NdeII GATC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 215
PkrI GCNGC 2 cut(s) 29, 270
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
SatI GCNGC 2 cut(s) 28, 269
Sau3AI GATC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 140
SetI ASST 3 cut(s) 159, 205, 210
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 4 cut(s) 12, 45, 185, 302
SsiI CCGC 2 cut(s) 87, 309
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 138
TasI AATT 4 cut(s) 12, 45, 185, 302
TscAI CASTG 1 cut(s) 85
TseI GCWGC 2 cut(s) 27, 268
TspRI CASTG 1 cut(s) 85
XapI RAATTY 2 cut(s) 45, 302
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.