Rh6AG079400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016470
Physical Location & Seq
Forward (+)
11544983 .. 11559064
14082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG079400.1

Sequence Viewer

Length: 867 bp
ATGCTTCACCAAACCCATACGGACAACACCACCAACAGCAATCCCCGGCATCAGATCGCCTCCTTGGGCCACTACGCCGCCGCACCACATCCCTGCGCCGCCGCGCCGCCTCAACCCAACGAAGGCCACCCCAGAACCCGATCCATGTCCGAACCCAGATCCGAAAAGGAGCCAGAGCTAGAAGCAAAGGTAGATGGAAGGCGTAGTGGGACTCCTGAGAAAAGTAATCTGCATGTTTCTGTGGGTAGTTGTTCTCAAACCGTTATTCCCGGTGTTGGTGAAGTGAGATGTGATGTAATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTTTAGATACGATGGAAGAAAAGCTGATGCCTAAAAGGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCATAAACAAAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTCTACAGATTTGACAACACATCAAGAAAAATCAAAGAAATTTACTAAGGATAAAGCTGACAAGAGGAAGAGAAAAAAATTGGTAATGGAAGAAGATGAAAATGCTAAGGTACTTGCAAGCTTAAAGTCTTTAGCACTTTCCTTGCCAGCTCCATTGAAGATACTTTGCAATTGGGGTGAAGAGGCATTTCAAGATGGGTGTGCTATCACGTTCGAAATGGAGTATGAAGTATTTGGGTATCAACGAAAGACGTTTATACTAGGATCAGATGTTGAAAGAATTGCCAGCATGAGGGAAGTTACTGGAAACTGCATAGTGGTATACCAGAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

288

Amino Acids

32.02

Weight (kDa)

6.39

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 533, 852
AccII CGCG 1 cut(s) 104
AciI CCGC 5 cut(s) 78, 81, 99, 102, 107
AclWI GGATC 3 cut(s) 135, 153, 802
AcsI RAATTY 1 cut(s) 569
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 122, 275, 822
AgsI TTSAA 4 cut(s) 338, 688, 722, 806
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 6 cut(s) 178, 367, 506, 587, 651, 680
AluI AGCT 6 cut(s) 178, 367, 506, 587, 651, 680
AlwI GGATC 3 cut(s) 135, 153, 802
AoxI GGCC 2 cut(s) 67, 124
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 1 cut(s) 569
AspLEI GCGC 2 cut(s) 98, 106
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 2 cut(s) 46, 270
AsuHPI GGTGA 2 cut(s) 290, 719
AsuII TTCGAA 1 cut(s) 744
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 320
BccI CCATC 4 cut(s) 188, 317, 349, 719
BciT130I CCWGG 1 cut(s) 443
BcnI CCSGG 2 cut(s) 46, 270
BfaI CTAG 2 cut(s) 179, 791
BfmI CTRYAG 2 cut(s) 525, 534
BisI GCNGC 6 cut(s) 78, 81, 99, 102, 107, 309
BlsI GCNGC 6 cut(s) 79, 82, 100, 103, 108, 310
Bme1390I CCNGG 3 cut(s) 46, 270, 443
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 46, 270, 443
BmsI GCATC 3 cut(s) 58, 360, 394
Bpu10I CCTNAGC 3 cut(s) 456, 507, 636
Bpu14I TTCGAA 1 cut(s) 744
BpuMI CCSGG 2 cut(s) 46, 270
BsaJI CCNNGG 3 cut(s) 44, 63, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 275, 822
Bse1I ACTGG 2 cut(s) 495, 838
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 44, 63, 442
BseGI GGATG 2 cut(s) 88, 409
BseLI CCNNNNNNNGG 3 cut(s) 122, 275, 822
BseMII CTCAG 3 cut(s) 207, 447, 521
BseNI ACTGG 2 cut(s) 495, 838
BseXI GCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 69, 126
BsiSI CCGG 2 cut(s) 46, 270
BslFI GGGAC 2 cut(s) 223, 401
BslI CCNNNNNNNGG 3 cut(s) 122, 275, 822
BsmFI GGGAC 2 cut(s) 223, 401
BsnI GGCC 2 cut(s) 69, 126
Bsp119I TTCGAA 1 cut(s) 744
Bsp143I GATC 5 cut(s) 54, 140, 158, 499, 794
BspACI CCGC 5 cut(s) 78, 81, 99, 102, 107
BspANI GGCC 2 cut(s) 69, 126
BspCNI CTCAG 3 cut(s) 208, 448, 520
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 3 cut(s) 135, 153, 802
BspT104I TTCGAA 1 cut(s) 744
BsrI ACTGG 2 cut(s) 495, 838
BssECI CCNNGG 3 cut(s) 44, 63, 442
BssMI GATC 5 cut(s) 54, 140, 158, 499, 794
BssNAI GTATAC 1 cut(s) 853
BssT1I CCWWGG 1 cut(s) 63
Bst1107I GTATAC 1 cut(s) 853
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 593, 705
BstBI TTCGAA 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 649, 678, 817
BstDEI CTNAG 5 cut(s) 216, 456, 507, 576, 636
BstF5I GGATG 2 cut(s) 88, 409
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 2 cut(s) 98, 106
BstKTI GATC 5 cut(s) 57, 143, 161, 502, 797
BstMBI GATC 5 cut(s) 54, 140, 158, 499, 794
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 44, 268, 441
BstSFI CTRYAG 2 cut(s) 525, 534
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BstZ17I GTATAC 1 cut(s) 853
BsuRI GGCC 2 cut(s) 69, 126
BtsCI GGATG 2 cut(s) 88, 409
Cac8I GCNNGC 3 cut(s) 649, 678, 817
CfoI GCGC 2 cut(s) 98, 106
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 641
CviAII CATG 4 cut(s) 145, 233, 515, 820
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 5 cut(s) 216, 456, 507, 576, 636
DpnI GATC 5 cut(s) 56, 142, 160, 501, 796
DpnII GATC 5 cut(s) 54, 140, 158, 499, 794
Eam1104I CTCTTC 2 cut(s) 593, 705
EarI CTCTTC 2 cut(s) 593, 705
Eco130I CCWWGG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 4 cut(s) 148, 236, 518, 823
FaqI GGGAC 2 cut(s) 223, 401
FatI CATG 4 cut(s) 144, 232, 514, 819
FblI GTMKAC 2 cut(s) 533, 852
Fnu4HI GCNGC 6 cut(s) 78, 81, 99, 102, 107, 309
FokI GGATG 2 cut(s) 75, 416
Fsp4HI GCNGC 6 cut(s) 78, 81, 99, 102, 107, 309
FspBI CTAG 2 cut(s) 179, 791
GlaI GCGC 2 cut(s) 97, 105
GluI GCNGC 6 cut(s) 78, 81, 99, 102, 107, 309
HaeIII GGCC 2 cut(s) 69, 126
HapII CCGG 2 cut(s) 46, 270
HhaI GCGC 2 cut(s) 98, 106
Hin1II CATG 4 cut(s) 148, 236, 518, 823
Hin6I GCGC 2 cut(s) 96, 104
HinP1I GCGC 2 cut(s) 96, 104
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 2 cut(s) 211, 313
HpaII CCGG 2 cut(s) 46, 270
HphI GGTGA 2 cut(s) 290, 719
Hpy166II GTNNAC 2 cut(s) 534, 853
Hpy188I TCNGA 4 cut(s) 54, 151, 163, 799
Hpy188III TCNNGA 3 cut(s) 215, 554, 722
Hpy8I GTNNAC 2 cut(s) 534, 853
HpyAV CCTTC 4 cut(s) 116, 192, 388, 394
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 2 cut(s) 740, 782
HpyCH4V TGCA 6 cut(s) 232, 485, 514, 647, 699, 843
HpyF3I CTNAG 5 cut(s) 216, 456, 507, 576, 636
HpySE526I ACGT 2 cut(s) 740, 782
Hsp92II CATG 4 cut(s) 148, 236, 518, 823
HspAI GCGC 2 cut(s) 96, 104
Kzo9I GATC 5 cut(s) 54, 140, 158, 499, 794
LmnI GCTCC 2 cut(s) 169, 685
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 3 cut(s) 58, 360, 394
MaeI CTAG 2 cut(s) 179, 791
MaeII ACGT 2 cut(s) 740, 782
MaeIII GTNAC 1 cut(s) 829
MalI GATC 5 cut(s) 56, 142, 160, 501, 796
MboI GATC 5 cut(s) 54, 140, 158, 499, 794
MfeI CAATTG 1 cut(s) 700
MflI RGATCY 1 cut(s) 158
MluCI AATT 5 cut(s) 569, 608, 700, 810, 862
MlyI GAGTC 2 cut(s) 205, 307
MnlI CCTC 6 cut(s) 70, 120, 451, 588, 706, 816
MseI TTAA 3 cut(s) 423, 653, 865
MspI CCGG 2 cut(s) 46, 270
MspR9I CCNGG 3 cut(s) 46, 270, 443
MunI CAATTG 1 cut(s) 700
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 104
NciI CCSGG 2 cut(s) 46, 270
NdeII GATC 5 cut(s) 54, 140, 158, 499, 794
NlaIII CATG 4 cut(s) 148, 236, 518, 823
NlaIV GGNNCC 1 cut(s) 171
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 744
PkrI GCNGC 6 cut(s) 79, 82, 100, 103, 108, 310
PleI GAGTC 2 cut(s) 205, 307
PpsI GAGTC 2 cut(s) 205, 307
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SaqAI TTAA 3 cut(s) 423, 653, 865
SatI GCNGC 6 cut(s) 78, 81, 99, 102, 107, 309
Sau3AI GATC 5 cut(s) 54, 140, 158, 499, 794
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 205, 307
ScrFI CCNGG 3 cut(s) 46, 270, 443
SfaNI GCATC 3 cut(s) 58, 360, 394
SfcI CTRYAG 2 cut(s) 525, 534
SfuI TTCGAA 1 cut(s) 744
Sse9I AATT 5 cut(s) 569, 608, 700, 810, 862
SsiI CCGC 5 cut(s) 78, 81, 99, 102, 107
SspMI CTAG 2 cut(s) 179, 791
StyD4I CCNGG 3 cut(s) 44, 268, 441
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 2 cut(s) 743, 785
TaqI TCGA 1 cut(s) 744
TasI AATT 5 cut(s) 569, 608, 700, 810, 862
TauI GCSGC 5 cut(s) 80, 83, 101, 104, 109
Tru1I TTAA 3 cut(s) 423, 653, 865
Tru9I TTAA 3 cut(s) 423, 653, 865
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 642, 771
TspGWI ACGGA 1 cut(s) 35
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 236
XmiI GTMKAC 2 cut(s) 533, 852
XspI CTAG 2 cut(s) 179, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.