Rh6BG176400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
29884592 .. 29894276
9685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG176400.1

Sequence Viewer

Length: 336 bp
ATGATTGAGGTAATTGGTTTACTTTGCAGCGAAAGGGTGGGCAAAATTCGAGAGAGAAACCAAAGACGGAGTCCTAGTGGAAGCGGTGGGGAAACTCAAGCATTAGTTCTACCCATTCAGTTCTGGAAGGTAAAATCCAGTTCTAGTACAAGGTCAAAAGGGAATGTGGAAGCTGCCATTGCTATGTATAATGCACAGAGAGGCAGGAAAGGCAGGAGTTCAGTTATGTGGAAGAATTTAGCAGCCATTCACATCATAAGCTTCCAAGTACAAAACAACAAAATAGCACACAATACTATAAATAAGATGGCAAAGCACTACAGTAAACAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

10.83

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AcsI RAATTY 2 cut(s) 45, 235
AfaI GTAC 2 cut(s) 148, 270
AluBI AGCT 2 cut(s) 173, 261
AluI AGCT 2 cut(s) 173, 261
ApeKI GCWGC 3 cut(s) 27, 173, 242
ApoI RAATTY 2 cut(s) 45, 235
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
BbvI GCAGC 3 cut(s) 39, 160, 254
BccI CCATC 1 cut(s) 301
BfaI CTAG 2 cut(s) 75, 144
BfmI CTRYAG 1 cut(s) 319
BisI GCNGC 3 cut(s) 28, 174, 243
BlsI GCNGC 3 cut(s) 29, 175, 244
BpuEI CTTGAG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 3 cut(s) 39, 160, 254
BspACI CCGC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 179, 210
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 39, 160, 254
Csp6I GTAC 2 cut(s) 147, 269
CviJI RGCY 3 cut(s) 173, 245, 261
CviKI_1 RGCY 3 cut(s) 173, 245, 261
CviQI GTAC 2 cut(s) 147, 269
FaiI YATR 5 cut(s) 185, 189, 227, 257, 299
Fnu4HI GCNGC 3 cut(s) 28, 174, 243
Fsp4HI GCNGC 3 cut(s) 28, 174, 243
FspBI CTAG 2 cut(s) 75, 144
GluI GCNGC 3 cut(s) 28, 174, 243
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 20, 326
Hpy188III TCNNGA 2 cut(s) 50, 124
Hpy8I GTNNAC 2 cut(s) 20, 326
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 27, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 210
LpnPI CCDG 4 cut(s) 109, 151, 190, 199
Lsp1109I GCAGC 3 cut(s) 39, 160, 254
MaeI CTAG 2 cut(s) 75, 144
MboII GAAGA 1 cut(s) 244
MluCI AATT 3 cut(s) 12, 45, 235
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 179, 210
PflFI GACNNNGTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 29, 175, 244
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 69
RsaI GTAC 2 cut(s) 148, 270
RsaNI GTAC 2 cut(s) 147, 269
RseI CAYNNNNRTG 1 cut(s) 182
SatI GCNGC 3 cut(s) 28, 174, 243
SchI GAGTC 1 cut(s) 79
SetI ASST 5 cut(s) 12, 132, 155, 175, 263
SfcI CTRYAG 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 3 cut(s) 12, 45, 235
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 75, 144
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 12, 45, 235
TatI WGTACW 2 cut(s) 146, 268
TseI GCWGC 3 cut(s) 27, 173, 242
TspGWI ACGGA 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 69
XapI RAATTY 2 cut(s) 45, 235
XspI CTAG 2 cut(s) 75, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.