Rh5AG202700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016470
Physical Location & Seq
Reverse (-)
23818716 .. 23828705
9990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG202700.1

Sequence Viewer

Length: 486 bp
ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAATTCAAAAAGTTTTAGATACGATGGAAGAAAACCTGATGCCTAAAAGGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACAGAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGTGGTAGATAATGCAAAACTGGAAGAAGATCAAACTCAGGTGCATGATGACCCTATAGGGTCTACAGATTTGACAACACAGCAAGAAAAATCAAAGTATAGAACTGCCTCTAAGCATTGTGTCGAGTCTGGAGGAAAAGCTAATGCAAATTCTAAGACAAGTATATACTGCAATTTATGCTTGGGTTGTCATTCAATTCCAAGTTTGCAGGACCATGAGTTTTATCTCCTCCATGGAATCCACGGATTGGGGATTGTTGCACTAACTGATAGACCATCAAGTTATCAAAGCCATGCTTTTCATAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.85

Weight (kDa)

6.29

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 421
AccI GTMKAC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 322
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 2 cut(s) 41, 369
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 314, 480
AluI AGCT 2 cut(s) 314, 480
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 385
AvaII GGWCC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 23
BccI CCATC 3 cut(s) 20, 52, 457
BciT130I CCWGG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 228, 237
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 63, 97
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 145, 406, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 145, 406, 415
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 150, 224
BseNI ACTGG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 406
BspCNI CTCAG 2 cut(s) 151, 223
BspHI TCATGA 1 cut(s) 482
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 3 cut(s) 145, 406, 415
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 159, 210, 285, 327
BstDSI CCRYGG 2 cut(s) 406, 415
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 2 cut(s) 228, 237
BstV1I GCAGC 1 cut(s) 23
BtgI CCRYGG 2 cut(s) 406, 415
BtsCI GGATG 1 cut(s) 112
CciI TCATGA 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 5 cut(s) 218, 389, 407, 467, 483
CviJI RGCY 4 cut(s) 158, 314, 465, 480
CviKI_1 RGCY 4 cut(s) 158, 314, 465, 480
DdeI CTNAG 4 cut(s) 159, 210, 285, 327
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 5 cut(s) 221, 392, 410, 470, 486
FalI AAGNNNNNCTT 2 cut(s) 454, 486
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 217, 388, 406, 466, 482
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 324
Hin1II CATG 5 cut(s) 221, 392, 410, 470, 486
HinfI GANTC 3 cut(s) 16, 299, 411
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 303, 483
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 91, 97
HpyCH4V TGCA 6 cut(s) 188, 217, 320, 345, 382, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 4 cut(s) 159, 210, 285, 327
Hsp92II CATG 5 cut(s) 221, 392, 410, 470, 486
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 83, 131, 158, 179, 197, 288, 368
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 2 cut(s) 63, 97
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 5 cut(s) 17, 74, 106, 209, 212
MluCI AATT 4 cut(s) 36, 322, 346, 369
MlyI GAGTC 2 cut(s) 10, 308
MnlI CCTC 4 cut(s) 154, 292, 299, 413
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 351
NcoI CCATGG 1 cut(s) 406
NdeII GATC 1 cut(s) 202
NlaIII CATG 5 cut(s) 221, 392, 410, 470, 486
PagI TCATGA 1 cut(s) 482
PfeI GAWTC 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 421
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 10, 307
PpsI GAGTC 2 cut(s) 10, 307
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 2 cut(s) 10, 308
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 72, 165, 216, 316, 482
SfaNI GCATC 2 cut(s) 63, 97
SfcI CTRYAG 2 cut(s) 228, 237
SinI GGWCC 1 cut(s) 385
Sse9I AATT 4 cut(s) 36, 322, 346, 369
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 406
TaqI TCGA 1 cut(s) 297
TasI AATT 4 cut(s) 36, 322, 346, 369
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.