Rroxscaffold_2G00091280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016470
Physical Location & Seq
Reverse (-)
12874682 .. 12878415
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091280.1

Sequence Viewer

Length: 351 bp
ATGGAAGAAGCAGCGACTCATTTTGATGGAAAATTAGTTCAAAAAGTTTTAGATTCGATGGAAGAAAAGCTGATTCCTAAAAGGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAAACGAATGACCAGGGCAAGTTGACCGAGGTGGTAGATAATGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGTGCATGATGACCCTACGGGTGCCATTGCTATGTATAATGCACACAGAGGCAGCAGAAAGGCAGGAGTTCAGTTTTGTGGAAGAATTTAGCGGTAAGTATGTCCGAGCTAGATTTGACCGTGAAGGTTGGTGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.43

Weight (kDa)

5.95

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 296
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 144
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 3 cut(s) 70, 209, 320
AluI AGCT 3 cut(s) 70, 209, 320
ApeKI GCWGC 2 cut(s) 11, 263
ApoI RAATTY 1 cut(s) 296
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 2 cut(s) 23, 275
BccI CCATC 2 cut(s) 20, 52
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 12, 264
BlsI GCNGC 2 cut(s) 13, 265
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 145, 159
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 145, 159
BseGI GGATG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 23, 275
BshNI GGYRCC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 145, 159
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 23, 275
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 218
CviAII CATG 1 cut(s) 217
CviJI RGCY 3 cut(s) 70, 209, 320
CviKI_1 RGCY 3 cut(s) 70, 209, 320
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 218, 244, 248, 312
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 12, 264
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 12, 264
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 12, 264
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 3 cut(s) 16, 53, 73
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 3 cut(s) 91, 97, 329
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 188, 216, 253
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 220
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 131, 158, 179, 260
Lsp1109I GCAGC 2 cut(s) 23, 275
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 321
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 6 cut(s) 17, 74, 106, 209, 212, 305
MluCI AATT 2 cut(s) 32, 296
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 2 cut(s) 154, 253
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 24, 241
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 53, 73
PkrI GCNGC 2 cut(s) 13, 265
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 234
RseI CAYNNNNRTG 2 cut(s) 24, 241
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 12, 264
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 146
SetI ASST 6 cut(s) 72, 165, 211, 322, 340, 350
SfaNI GCATC 1 cut(s) 97
SmiMI CAYNNNNRTG 2 cut(s) 24, 241
Sse9I AATT 2 cut(s) 32, 296
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 56
TaqII GACCGA 1 cut(s) 173
TasI AATT 2 cut(s) 32, 296
TfiI GAWTC 2 cut(s) 53, 73
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 218
TseI GCWGC 2 cut(s) 11, 263
TspRI CASTG 1 cut(s) 218
XapI RAATTY 1 cut(s) 296
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.