Rh6BG156600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016470
Physical Location & Seq
Reverse (-)
25269024 .. 25276401
7378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG156600.1

Sequence Viewer

Length: 522 bp
ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTAGTGCTTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCAAGAAAAATCAAAGAGGCAAGAAAGGCAGGAGTTCAGTTTTGTGGAAGAATTTAGCGGGTTGTGGAACATTGAAATTGAAGGTGATGCTGAGAATGTTACTGCCCATAGTTCTATTGAAGTTAACTTGAGTGATGTGGGATTTGTTAGGATGATATTCAAGCTCTTCTTCCCCAGTTTGGTGTTTGCTCCTGCAATATCTTATGGCACGATCTTCGGTGTCATTGCCTATGGAGAATCTGGTATAACGAGCCTTCATGGCTCACGTCCAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.32

Weight (kDa)

5.55

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 5 cut(s) 41, 317, 323, 362, 403
AjiI CACGTC 1 cut(s) 509
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 4 cut(s) 53, 70, 197, 406
AluI AGCT 4 cut(s) 53, 70, 197, 406
ApeKI GCWGC 2 cut(s) 11, 53
ApoI RAATTY 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 23, 40
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 50, 71
BfmI CTRYAG 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 501
BisI GCNGC 2 cut(s) 12, 54
BlsI GCNGC 2 cut(s) 13, 55
Bme1390I CCNGG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 97, 319
BmuI ACTGGG 1 cut(s) 411
Bpu10I CCTNAGC 2 cut(s) 159, 198
BpuEI CTTGAG 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 3 cut(s) 186, 417, 512
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 112, 399
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 150, 212, 324
BseNI ACTGG 3 cut(s) 186, 417, 512
BseXI GCAGC 2 cut(s) 23, 40
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 190, 453
BspACI CCGC 1 cut(s) 300
BspCNI CTCAG 3 cut(s) 151, 211, 325
BspQI GCTCTTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 3 cut(s) 186, 417, 512
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 190, 453
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 159, 198, 333
BstF5I GGATG 2 cut(s) 112, 399
BstKTI GATC 2 cut(s) 193, 456
BstMBI GATC 2 cut(s) 190, 453
BstMWI GCNNNNNNNGC 2 cut(s) 268, 501
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 23, 40
BtrI CACGTC 1 cut(s) 509
BtsCI GGATG 2 cut(s) 112, 399
CviAII CATG 2 cut(s) 206, 500
CviJI RGCY 7 cut(s) 53, 70, 158, 197, 406, 495, 504
CviKI_1 RGCY 7 cut(s) 53, 70, 158, 197, 406, 495, 504
DdeI CTNAG 3 cut(s) 159, 198, 333
DpnI GATC 2 cut(s) 192, 455
DpnII GATC 2 cut(s) 190, 453
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 209, 503
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 205, 499
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 12, 54
FokI GGATG 2 cut(s) 119, 406
Fsp4HI GCNGC 2 cut(s) 12, 54
FspBI CTAG 2 cut(s) 50, 71
GluI GCNGC 2 cut(s) 12, 54
Hin1II CATG 2 cut(s) 209, 503
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 2 cut(s) 16, 479
HpaI GTTAAC 1 cut(s) 367
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 367, 517
Hpy8I GTNNAC 2 cut(s) 367, 517
HpyAV CCTTC 4 cut(s) 91, 97, 317, 506
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 4 cut(s) 56, 176, 205, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 501
HpyF3I CTNAG 3 cut(s) 159, 198, 333
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 2 cut(s) 209, 503
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 190, 453
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 8 cut(s) 131, 158, 167, 185, 257, 430, 447, 468
Lsp1109I GCAGC 2 cut(s) 23, 40
LweI GCATC 2 cut(s) 97, 319
MaeI CTAG 2 cut(s) 50, 71
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 340
MalI GATC 2 cut(s) 192, 455
MboI GATC 2 cut(s) 190, 453
MboII GAAGA 9 cut(s) 17, 74, 106, 197, 200, 302, 400, 403, 448
MluCI AATT 2 cut(s) 293, 318
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 2 cut(s) 154, 252
MseI TTAA 3 cut(s) 78, 126, 366
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 268, 501
NdeII GATC 2 cut(s) 190, 453
NlaIII CATG 2 cut(s) 209, 503
PciSI GCTCTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 2 cut(s) 13, 55
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 78, 126, 366
SatI GCNGC 2 cut(s) 12, 54
Sau3AI GATC 2 cut(s) 190, 453
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 146
SetI ASST 9 cut(s) 55, 72, 87, 165, 199, 204, 328, 408, 511
SfaNI GCATC 2 cut(s) 97, 319
SfcI CTRYAG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 293, 318
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 50, 71
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 511
TasI AATT 2 cut(s) 293, 318
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 3 cut(s) 78, 126, 366
Tru9I TTAA 3 cut(s) 78, 126, 366
TseI GCWGC 2 cut(s) 11, 53
TspDTI ATGAA 1 cut(s) 488
XapI RAATTY 1 cut(s) 293
XspI CTAG 2 cut(s) 50, 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.