Rh4AG001700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
283367 .. 291335
7969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG001700.1

Sequence Viewer

Length: 258 bp
ATGGAAGAAAAGCTAGTGCCTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATATGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCATGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCGAGAAAAATCAAAGAGGCAAGAAAGGCAGGAGTTCAGTTTTGTGGAAGAATTTAGCGGTAAGTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.98

Weight (kDa)

6.91

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 236
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 13, 140
AluI AGCT 2 cut(s) 13, 140
ApoI RAATTY 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 14
BfmI CTRYAG 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 55
CviAII CATG 2 cut(s) 143, 149
CviJI RGCY 3 cut(s) 13, 101, 140
CviKI_1 RGCY 3 cut(s) 13, 101, 140
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 146, 152
FaiI YATR 8 cut(s) 60, 81, 144, 150, 161, 168, 170, 252
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 142, 148
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 14
Hin1II CATG 2 cut(s) 146, 152
HpyAV CCTTC 2 cut(s) 34, 40
HpyCH4V TGCA 2 cut(s) 119, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 146, 152
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 74, 101, 110, 200
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 14
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 17, 49, 140, 143, 245
MluCI AATT 1 cut(s) 236
MnlI CCTC 2 cut(s) 97, 195
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 146, 152
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 89
SetI ASST 4 cut(s) 15, 30, 108, 142
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 236
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 87
TasI AATT 1 cut(s) 236
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
XapI RAATTY 1 cut(s) 236
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.