Rh1AG329100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016470
Physical Location & Seq
Forward (+)
56184969 .. 56192896
7928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG329100.1

Sequence Viewer

Length: 684 bp
ATGCTTTTCAGTCAGTTTGATGTTTTCAATTGGAGGTGTCAATTGGGTTTTGGTGATTATTCTATCTGCCTTGATGTGGGTTTGGATGTTGGTAGTGGAAACTGGCTTTCTTTTGATCATTTGTCTTGCCGACTGTCAATCACTGCTTACTACGTTAACACGCTACAGTATCAATTTAAGGTACATTACAACAATATTGTTATAGCAACGGATTTCTTAATTGGAGGGTGTTTCGGACTATTAGAGAAGGTGTTGACTATTGCTGCAGAGCTAGAAGCAAAGGTAGATGGAAGGCGTAGTGGGACAAGCGACAAAAGTAATCTGCATGGTTCTGTGGGTAGTTGTTCACAAACCGATATTCCCGGTGTTGGTGAAGTGAGATGTGATGTGATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTGGTGCTTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCAAGAAAAATCAAAGGTATATATGTTGGTATATGAAACTAGTGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

5.71

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 76, 368
AgsI TTSAA 2 cut(s) 28, 431
AhlI ACTAGT 1 cut(s) 671
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 271, 443, 460, 587
AluI AGCT 4 cut(s) 271, 443, 460, 587
ApeKI GCWGC 3 cut(s) 263, 401, 443
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 65, 383
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 250, 413, 430
BccI CCATC 3 cut(s) 281, 385, 410
BciT130I CCWGG 1 cut(s) 536
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 363
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 3 cut(s) 272, 440, 672
BfmI CTRYAG 3 cut(s) 164, 264, 606
BisI GCNGC 3 cut(s) 264, 402, 444
BlsI GCNGC 3 cut(s) 265, 403, 445
Bme1390I CCNGG 2 cut(s) 363, 536
BmrFI CCNGG 2 cut(s) 363, 536
BmsI GCATC 1 cut(s) 487
Bpu10I CCTNAGC 2 cut(s) 549, 588
BpuMI CCSGG 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 368
Bse1I ACTGG 2 cut(s) 107, 576
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 2 cut(s) 91, 502
BseLI CCNNNNNNNGG 2 cut(s) 76, 368
BseMII CTCAG 2 cut(s) 540, 602
BseNI ACTGG 2 cut(s) 107, 576
BseXI GCAGC 3 cut(s) 250, 413, 430
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 2 cut(s) 316, 494
BslI CCNNNNNNNGG 2 cut(s) 76, 368
BsmFI GGGAC 2 cut(s) 316, 494
Bsp143I GATC 2 cut(s) 115, 580
BspCNI CTCAG 2 cut(s) 541, 601
BspMAI CTGCAG 1 cut(s) 268
BsrI ACTGG 2 cut(s) 107, 576
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 2 cut(s) 115, 580
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 135, 168
BstDEI CTNAG 2 cut(s) 549, 588
BstF5I GGATG 2 cut(s) 91, 502
BstKTI GATC 2 cut(s) 118, 583
BstMBI GATC 2 cut(s) 115, 580
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 361, 534
BstSFI CTRYAG 3 cut(s) 164, 264, 606
BstV1I GCAGC 3 cut(s) 250, 413, 430
BtsCI GGATG 2 cut(s) 91, 502
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 326, 596
CviJI RGCY 6 cut(s) 106, 271, 443, 460, 548, 587
CviKI_1 RGCY 6 cut(s) 106, 271, 443, 460, 548, 587
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 549, 588
DpnI GATC 2 cut(s) 117, 582
DpnII GATC 2 cut(s) 115, 580
EcoRII CCWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 329, 599
FaqI GGGAC 2 cut(s) 316, 494
FatI CATG 2 cut(s) 325, 595
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 264, 402, 444
FokI GGATG 2 cut(s) 98, 509
Fsp4HI GCNGC 3 cut(s) 264, 402, 444
FspBI CTAG 3 cut(s) 272, 440, 672
GluI GCNGC 3 cut(s) 264, 402, 444
HapII CCGG 1 cut(s) 363
Hin1II CATG 2 cut(s) 329, 599
HincII GTYRAC 2 cut(s) 157, 255
HindII GTYRAC 2 cut(s) 157, 255
HinfI GANTC 1 cut(s) 406
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 363
HphI GGTGA 2 cut(s) 65, 383
Hpy166II GTNNAC 3 cut(s) 157, 255, 347
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 157, 255, 347
HpyAV CCTTC 4 cut(s) 241, 285, 481, 487
HpyCH4III ACNGT 2 cut(s) 135, 168
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 266, 325, 446, 566, 595, 677
HpyF3I CTNAG 2 cut(s) 549, 588
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 329, 599
Ksp22I TGATCA 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 115, 580
LpnPI CCDG 7 cut(s) 88, 376, 446, 521, 548, 557, 575
Lsp1109I GCAGC 3 cut(s) 250, 413, 430
LweI GCATC 1 cut(s) 487
MaeI CTAG 3 cut(s) 272, 440, 672
MaeII ACGT 1 cut(s) 153
MalI GATC 2 cut(s) 117, 582
MboI GATC 2 cut(s) 115, 580
MboII GAAGA 5 cut(s) 407, 464, 496, 587, 590
MfeI CAATTG 2 cut(s) 28, 41
MluCI AATT 4 cut(s) 28, 41, 173, 219
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 3 cut(s) 27, 218, 544
MseI TTAA 5 cut(s) 156, 177, 218, 468, 516
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 363, 536
MunI CAATTG 2 cut(s) 28, 41
MvaI CCWGG 1 cut(s) 536
NciI CCSGG 1 cut(s) 363
NdeII GATC 2 cut(s) 115, 580
NlaIII CATG 2 cut(s) 329, 599
PkrI GCNGC 3 cut(s) 265, 403, 445
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 156, 177, 218, 468, 516
SatI GCNGC 3 cut(s) 264, 402, 444
Sau3AI GATC 2 cut(s) 115, 580
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 363, 536
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 3 cut(s) 164, 264, 606
SpeI ACTAGT 1 cut(s) 671
Sse9I AATT 4 cut(s) 28, 41, 173, 219
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 272, 440, 672
StyD4I CCNGG 2 cut(s) 361, 534
TaaI ACNGT 2 cut(s) 135, 168
TaiI ACGT 1 cut(s) 156
TasI AATT 4 cut(s) 28, 41, 173, 219
Tru1I TTAA 5 cut(s) 156, 177, 218, 468, 516
Tru9I TTAA 5 cut(s) 156, 177, 218, 468, 516
TscAI CASTG 1 cut(s) 148
TseI GCWGC 3 cut(s) 263, 401, 443
TspDTI ATGAA 1 cut(s) 681
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 148
XspI CTAG 3 cut(s) 272, 440, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.