Rh2AG183900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016470
Physical Location & Seq
Reverse (-)
17851222 .. 17887943
36722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG183900.1

Sequence Viewer

Length: 366 bp
ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTGGTGCTTAAAAAGGTTTCCAAGAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCAAGAAAAATCAAAGCCCCGTTGCCTAGATTTGGAGCAACGAGCTCCGCCAGGGAGATACCCACTGGCCATACCTGCTGGCCATAACTCCGCCAACCCACTGGCTATAGCTCCGCTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.38

Weight (kDa)

8.63

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccBSI CCGCTC 1 cut(s) 358
AciI CCGC 4 cut(s) 290, 333, 356, 361
AcoI YGGCCR 2 cut(s) 309, 322
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 2 cut(s) 144, 292
AluBI AGCT 5 cut(s) 53, 70, 197, 287, 353
AluI AGCT 5 cut(s) 53, 70, 197, 287, 353
Alw21I GWGCWC 1 cut(s) 289
AoxI GGCC 2 cut(s) 309, 322
ApeKI GCWGC 2 cut(s) 11, 53
BalI TGGCCA 2 cut(s) 311, 324
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 23, 40
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 2 cut(s) 146, 294
BfaI CTAG 2 cut(s) 50, 269
BfmI CTRYAG 2 cut(s) 216, 348
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 2 cut(s) 12, 54
BlsI GCNGC 2 cut(s) 13, 55
Bme1390I CCNGG 2 cut(s) 146, 294
BmrFI CCNGG 2 cut(s) 146, 294
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 2 cut(s) 159, 198
BsaJI CCNNGG 2 cut(s) 145, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 186, 312, 348
BseBI CCWGG 2 cut(s) 146, 294
BseDI CCNNGG 2 cut(s) 145, 293
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 150, 212
BseNI ACTGG 3 cut(s) 186, 312, 348
BseXI GCAGC 2 cut(s) 23, 40
BshFI GGCC 2 cut(s) 311, 324
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 2 cut(s) 311, 324
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 4 cut(s) 290, 333, 356, 361
BspANI GGCC 2 cut(s) 311, 324
BspCNI CTCAG 2 cut(s) 151, 211
BspMI ACCTGC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 358
BsrI ACTGG 3 cut(s) 186, 312, 348
BssECI CCNNGG 2 cut(s) 145, 293
BssMI GATC 1 cut(s) 190
Bst2UI CCWGG 2 cut(s) 146, 294
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 159, 198
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 2 cut(s) 146, 294
BstSCI CCNGG 2 cut(s) 144, 292
BstSFI CTRYAG 2 cut(s) 216, 348
BstV1I GCAGC 2 cut(s) 23, 40
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuRI GGCC 2 cut(s) 311, 324
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 305, 341
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 322
CviAII CATG 1 cut(s) 206
DdeI CTNAG 2 cut(s) 159, 198
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 309, 322
EciI GGCGGA 2 cut(s) 279, 322
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 144, 292
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 1 cut(s) 209
FaiI YATR 8 cut(s) 138, 207, 218, 225, 227, 314, 327, 350
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 12, 54
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 12, 54
FspBI CTAG 2 cut(s) 50, 269
GluI GCNGC 2 cut(s) 12, 54
HaeIII GGCC 2 cut(s) 311, 324
Hin1II CATG 1 cut(s) 209
HinfI GANTC 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 91, 97
HpyCH4V TGCA 3 cut(s) 56, 176, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 159, 198
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 4 cut(s) 277, 292, 358, 363
Lsp1109I GCAGC 2 cut(s) 23, 40
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 50, 269
MalI GATC 1 cut(s) 192
MbiI CCGCTC 1 cut(s) 358
MboI GATC 1 cut(s) 190
MboII GAAGA 5 cut(s) 17, 74, 106, 197, 200
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 2 cut(s) 311, 324
MluNI TGGCCA 2 cut(s) 311, 324
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 1 cut(s) 154
Mox20I TGGCCA 2 cut(s) 311, 324
MscI TGGCCA 2 cut(s) 311, 324
MseI TTAA 2 cut(s) 78, 126
Msp20I TGGCCA 2 cut(s) 311, 324
MspA1I CMGCKG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 146, 294
MvaI CCWGG 2 cut(s) 146, 294
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 13, 55
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp124BI GAGCTC 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 144, 292
PspGI CCWGG 2 cut(s) 144, 292
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 78, 126
SatI GCNGC 2 cut(s) 12, 54
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 146, 294
SduI GDGCHC 1 cut(s) 289
SetI ASST 9 cut(s) 55, 72, 87, 165, 199, 204, 289, 319, 355
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 2 cut(s) 216, 348
SsiI CCGC 4 cut(s) 290, 333, 356, 361
SspMI CTAG 2 cut(s) 50, 269
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 144, 292
Tru1I TTAA 2 cut(s) 78, 126
Tru9I TTAA 2 cut(s) 78, 126
TscAI CASTG 2 cut(s) 312, 348
TseI GCWGC 2 cut(s) 11, 53
TspRI CASTG 2 cut(s) 312, 348
XspI CTAG 2 cut(s) 50, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.