Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016470

Physical Location & Seq

Genomic Coordinates Reverse (-)

53778887 .. 53785882

Gene Structure 6996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG380700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTTTCTGTCATAGGGATTTCTTAATTGGAGGGTGTGCTGGACTATTAGAGAAGGTGTTGATTATTAGAGAAGAGCTAGAAGCAAAGGTAGATGGAAGGCGTAGTGGGACAAGCGACAAAAGTAATCTGCATGGTTCTGTGGGTAGTTGTTCACAAACCGATATTCCTGGTGTTGGTGAAGTGAGATGTGATGTGATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCATTGGAAGAAAAGCTGGTGCTTAAAAAGGTTTCCAAGAAGGAGAAGGATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTATATAGATTTGACAACAAAGCAAGAAAAATCAAAGAAATTTACCAAGGATAAAGCTGAGAAGAGGAAGAGAAAAAAATTGGTACTGGAAGAAGACGAAAATGCTAAGGTACTAATTAGCTTAAAGTCTTTAGCACCTTCCTTGCCAGCTCCATTGAAGATACTTTGCAATTGGGGTGAAGAGGCATTTAAAGATGGGCGTGCTATCACGTTCGAAATGGAGTCTGAGGTATTTGGGTATCAACGAAAGACGTTTATACTAGGATCAGATGTTGAAAGAATTGCTAGCATGAGGGAAGTTACTGGAAACTGCATAGTGGTATACCAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

249

Amino Acids

27.78

Weight (kDa)

7.59

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016470)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001218.1_g000051
rosa_roxburghii	Rroxscaffold_2G00088580 Rroxscaffold_2G00091280
rosa_rugosa	Rorug07G0202600.1
rosa_samantha	Rh1AG329100 Rh1DG304000 Rh2AG183900 Rh2AG363100 Rh2BG380700 Rh4AG001700 Rh4AG112000 Rh5AG202700 Rh6AG079400 Rh6BG156600 Rh6BG176400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	738
AclWI	GGATC	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	2 cut(s)	501, 528
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	239, 574, 692
AjnI	CCWGG	2 cut(s)	169, 339
AluBI	AGCT	7 cut(s)	79, 251, 268, 392, 473, 537, 566
AluI	AGCT	7 cut(s)	79, 251, 268, 392, 473, 537, 566
AlwI	GGATC	1 cut(s)	688
ApeKI	GCWGC	2 cut(s)	209, 251
ApoI	RAATTY	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	191, 605
AsuII	TTCGAA	1 cut(s)	630
AsuNHI	GCTAGC	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	221, 238
BccI	CCATC	4 cut(s)	89, 193, 218, 605
BciT130I	CCWGG	2 cut(s)	171, 341
BfaI	CTAG	4 cut(s)	80, 248, 677, 702
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	210, 252
BlsI	GCNGC	2 cut(s)	211, 253
Bme1390I	CCNGG	2 cut(s)	171, 341
BmrFI	CCNGG	2 cut(s)	171, 341
BmsI	GCATC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	3 cut(s)	354, 393, 522
Bpu14I	TTCGAA	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	340, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	381, 507, 724
BseBI	CCWGG	2 cut(s)	171, 341
BseDI	CCNNGG	2 cut(s)	340, 462
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	4 cut(s)	345, 407, 465, 633
BseNI	ACTGG	3 cut(s)	381, 507, 724
BseXI	GCAGC	2 cut(s)	221, 238
BslFI	GGGAC	2 cut(s)	124, 299
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	124, 299
Bsp119I	TTCGAA	1 cut(s)	630
Bsp143I	GATC	2 cut(s)	385, 680
BspCNI	CTCAG	4 cut(s)	346, 406, 466, 634
BspOI	GCTAGC	1 cut(s)	705
BspPI	GGATC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	381, 507, 724
BssECI	CCNNGG	2 cut(s)	340, 462
BssMI	GATC	2 cut(s)	385, 680
BssNAI	GTATAC	1 cut(s)	739
BssT1I	CCWWGG	1 cut(s)	462
Bst1107I	GTATAC	1 cut(s)	739
Bst2UI	CCWGG	2 cut(s)	171, 341
Bst6I	CTCTTC	4 cut(s)	69, 473, 479, 591
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	564, 618, 703
BstDEI	CTNAG	5 cut(s)	354, 393, 474, 522, 642
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	388, 683
BstMBI	GATC	2 cut(s)	385, 680
BstNI	CCWGG	2 cut(s)	171, 341
BstSCI	CCNGG	2 cut(s)	169, 339
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	221, 238
BstV2I	GAAGAC	1 cut(s)	516
BstZ17I	GTATAC	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	3 cut(s)	564, 618, 703
Csp6I	GTAC	2 cut(s)	500, 527
CviAII	CATG	3 cut(s)	134, 401, 706
CviJI	RGCY	8 cut(s)	79, 251, 268, 353, 392, 473, 537, 566
CviKI_1	RGCY	8 cut(s)	79, 251, 268, 353, 392, 473, 537, 566
CviQI	GTAC	2 cut(s)	500, 527
DdeI	CTNAG	5 cut(s)	354, 393, 474, 522, 642
DpnI	GATC	2 cut(s)	387, 682
DpnII	GATC	2 cut(s)	385, 680
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	4 cut(s)	69, 473, 479, 591
EarI	CTCTTC	4 cut(s)	69, 473, 479, 591
Eco130I	CCWWGG	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	169, 339
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	137, 404, 709
FaqI	GGGAC	2 cut(s)	124, 299
FatI	CATG	3 cut(s)	133, 400, 705
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	2 cut(s)	210, 252
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	210, 252
FspBI	CTAG	4 cut(s)	80, 248, 677, 702
GluI	GCNGC	2 cut(s)	210, 252
Hin1II	CATG	3 cut(s)	137, 404, 709
HinfI	GANTC	2 cut(s)	214, 638
HphI	GGTGA	2 cut(s)	191, 605
Hpy166II	GTNNAC	2 cut(s)	155, 739
Hpy188I	TCNGA	2 cut(s)	643, 685
Hpy8I	GTNNAC	2 cut(s)	155, 739
HpyAV	CCTTC	5 cut(s)	49, 93, 286, 292, 564
HpyCH4IV	ACGT	2 cut(s)	626, 668
HpyCH4V	TGCA	6 cut(s)	133, 254, 371, 400, 585, 729
HpyF3I	CTNAG	5 cut(s)	354, 393, 474, 522, 642
HpySE526I	ACGT	2 cut(s)	626, 668
Hsp92II	CATG	3 cut(s)	137, 404, 709
Kzo9I	GATC	2 cut(s)	385, 680
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	221, 238
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	80, 248, 677, 702
MaeII	ACGT	2 cut(s)	626, 668
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	2 cut(s)	387, 682
MboI	GATC	2 cut(s)	385, 680
MfeI	CAATTG	1 cut(s)	586
MluCI	AATT	6 cut(s)	27, 455, 494, 531, 586, 696
MlyI	GAGTC	2 cut(s)	208, 647
MnlI	CCTC	7 cut(s)	26, 349, 474, 592, 637, 702, 738
MseI	TTAA	5 cut(s)	26, 276, 321, 539, 606
MspR9I	CCNGG	2 cut(s)	171, 341
MunI	CAATTG	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	171, 341
NdeII	GATC	2 cut(s)	385, 680
NheI	GCTAGC	1 cut(s)	701
NlaIII	CATG	3 cut(s)	137, 404, 709
NspV	TTCGAA	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	211, 253
PleI	GAGTC	2 cut(s)	208, 646
PpsI	GAGTC	2 cut(s)	208, 646
Psp6I	CCWGG	2 cut(s)	169, 339
PspGI	CCWGG	2 cut(s)	169, 339
RsaI	GTAC	2 cut(s)	501, 528
RsaNI	GTAC	2 cut(s)	500, 527
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	26, 276, 321, 539, 606
SatI	GCNGC	2 cut(s)	210, 252
Sau3AI	GATC	2 cut(s)	385, 680
SchI	GAGTC	2 cut(s)	208, 647
ScrFI	CCNGG	2 cut(s)	171, 341
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	630
Sse9I	AATT	6 cut(s)	27, 455, 494, 531, 586, 696
SspMI	CTAG	4 cut(s)	80, 248, 677, 702
StyD4I	CCNGG	2 cut(s)	169, 339
StyI	CCWWGG	1 cut(s)	462
TaiI	ACGT	2 cut(s)	629, 671
TaqI	TCGA	1 cut(s)	630
TasI	AATT	6 cut(s)	27, 455, 494, 531, 586, 696
Tru1I	TTAA	5 cut(s)	26, 276, 321, 539, 606
Tru9I	TTAA	5 cut(s)	26, 276, 321, 539, 606
TseI	GCWGC	2 cut(s)	209, 251
XapI	RAATTY	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	4 cut(s)	80, 248, 677, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.