Rh1DG304000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
53091714 .. 53112531
20818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG304000.1

Sequence Viewer

Length: 405 bp
ATGGAAGAAGCAGCGACTCGTTTTGATGGGAAATCAGTTCAAAAAGTTCTAGCTGCAATGGAAGAAAAGCTGGTGCCTAAAAAGGTTTCCAAGAAGAAGGAGAAGAATGCCAAATCTGTCCCCATTAACCACAAACATAATGACCAGGGCAAGTTGGCTGAGGTGGTAGATAATGCAAAACTGGAAGAAGATCAAGCTCAGGTGCATGATGACCCTATAGGGTGTATAGATTTGACAACAAAGCGAGAAAAATCAAAGTTTTATCGTTATCATTGTGATCTCATGATGACAAAAATGATGAGGAAAATCAAAGAGGCTGACTTTGACAAGAAGAAACTTTGGGAAAATAGTAATGGAATGCACGGGCATCCTTACCATGCCAGCATTATTATTGTCAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

9.32

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 3 cut(s) 53, 70, 197
AluI AGCT 3 cut(s) 53, 70, 197
ApeKI GCWGC 2 cut(s) 11, 53
BanI GGYRCC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 23, 40
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 12, 54
BlsI GCNGC 2 cut(s) 13, 55
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 376
Bpu10I CCTNAGC 2 cut(s) 159, 198
BsaJI CCNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 2 cut(s) 150, 212
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 23, 40
BshNI GGYRCC 1 cut(s) 73
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 2 cut(s) 112, 363
Bsp143I GATC 2 cut(s) 190, 277
BspCNI CTCAG 2 cut(s) 151, 211
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 190, 277
Bst2UI CCWGG 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 159, 198
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 193, 280
BstMBI GATC 2 cut(s) 190, 277
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 23, 40
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 382
CciI TCATGA 1 cut(s) 282
CviAII CATG 3 cut(s) 206, 283, 377
CviJI RGCY 5 cut(s) 53, 70, 158, 197, 317
CviKI_1 RGCY 5 cut(s) 53, 70, 158, 197, 317
DdeI CTNAG 2 cut(s) 159, 198
DpnI GATC 2 cut(s) 192, 279
DpnII GATC 2 cut(s) 190, 277
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 3 cut(s) 209, 286, 380
FaiI YATR 6 cut(s) 138, 207, 218, 227, 284, 378
FaqI GGGAC 1 cut(s) 104
FatI CATG 3 cut(s) 205, 282, 376
Fnu4HI GCNGC 2 cut(s) 12, 54
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 12, 54
FspBI CTAG 1 cut(s) 50
GluI GCNGC 2 cut(s) 12, 54
Hin1II CATG 3 cut(s) 209, 286, 380
HinfI GANTC 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 56, 176, 205, 361
HpyF3I CTNAG 2 cut(s) 159, 198
Hsp92II CATG 3 cut(s) 209, 286, 380
Kzo9I GATC 2 cut(s) 190, 277
LpnPI CCDG 6 cut(s) 56, 131, 158, 167, 185, 394
Lsp1109I GCAGC 2 cut(s) 23, 40
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 50
MalI GATC 2 cut(s) 192, 279
MboI GATC 2 cut(s) 190, 277
MboII GAAGA 7 cut(s) 17, 74, 106, 115, 197, 200, 343
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 3 cut(s) 154, 294, 307
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 2 cut(s) 112, 363
MvaI CCWGG 1 cut(s) 146
NdeII GATC 2 cut(s) 190, 277
NlaIII CATG 3 cut(s) 209, 286, 380
NlaIV GGNNCC 1 cut(s) 75
PagI TCATGA 1 cut(s) 282
PctI GAATGC 2 cut(s) 112, 363
PkrI GCNGC 2 cut(s) 13, 55
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 12, 54
Sau3AI GATC 2 cut(s) 190, 277
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 146
SetI ASST 6 cut(s) 55, 72, 87, 165, 199, 204
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 216
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 144
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 2 cut(s) 11, 53
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.